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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1c7f FMN Flavodoxin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1c7f FMNFlavodoxin / 1.226
1akr FMNFlavodoxin / 1.093
1azl FMNFlavodoxin / 1.079
1akw FMNFlavodoxin / 1.063
1j9g FMNFlavodoxin / 1.063
2fx2 FMNFlavodoxin / 1.057
1wsb FMNFlavodoxin / 1.040
3f6r FMNFlavodoxin / 1.036
1xyv FMNFlavodoxin / 1.003
1j8q FMNFlavodoxin / 0.988
1aku FMNFlavodoxin / 0.966
3f6s FMNFlavodoxin / 0.963
1xyy FMNFlavodoxin / 0.962
1ahn FMNFlavodoxin 1 / 0.897
1yob FMNFlavodoxin 2 / 0.888
4fx2 FMNFlavodoxin / 0.879
1fx1 FMNFlavodoxin / 0.866
3f90 FMNFlavodoxin / 0.847
5tgz FMNCannabinoid receptor 1 / 0.844
4n82 FMNRibonucleotide reductase (NrdI family protein), putative / 0.826
5xra FMNCannabinoid receptor 1 / 0.823
3esy FMNFlavodoxin / 0.821
5xr8 FMNCannabinoid receptor 1 / 0.817
3kap FMNFlavodoxin / 0.815
3esz FMNFlavodoxin / 0.814
2fcr FMNFlavodoxin / 0.806
2bf4 FMNNADPH--cytochrome P450 reductase / 0.805
2v5v FMNFlavodoxin / 0.800
5fx2 FMNFlavodoxin / 0.796
4oxx FMNCindoxin / 0.795
1czn FMNFlavodoxin / 0.794
4bmo FMNProtein NrdI / 0.776
2v5u FMNFlavodoxin / 0.775
1ofv FMNFlavodoxin / 0.770
4yao FMNNADPH--cytochrome P450 reductase / 0.767
1bu5 RBFFlavodoxin / 0.766
1fue FMNFlavodoxin / 0.758
1tll FMNNitric oxide synthase, brain 1.14.13.39 0.756
4bmp FMNProtein NrdI / 0.756
2bn4 FMNNADPH--cytochrome P450 reductase / 0.750
3hr4 FMNNitric oxide synthase, inducible 1.14.13.39 0.747
3qe2 FMNNADPH--cytochrome P450 reductase / 0.741
3qfr FMNNADPH--cytochrome P450 reductase / 0.726
1amo FMNNADPH--cytochrome P450 reductase / 0.725
3n39 FMNProtein NrdI / 0.724
3ojx FMNNADPH--cytochrome P450 reductase / 0.717
4y7c FMNNADPH--cytochrome P450 reductase / 0.706
3kaq FMNFlavodoxin / 0.703
1ja0 FMNNADPH--cytochrome P450 reductase / 0.702
2ohi FMNType A flavoprotein FprA 1 0.700
2ohh FMNType A flavoprotein FprA 1 0.699
3n3a FMNProtein NrdI / 0.699
4h2d FMNNADPH-dependent diflavin oxidoreductase 1 / 0.697
3ojw FMNNADPH--cytochrome P450 reductase / 0.694
2hpv FMNFMN-dependent NADH-azoreductase 1.7 0.689
2ohj FMNType A flavoprotein FprA 1 0.681
3n3b FMNProtein NrdI / 0.677
1ja1 FMNNADPH--cytochrome P450 reductase / 0.674
2w5u FMNFlavodoxin / 0.673
2mok FMNFlavodoxin 1 / 0.671
1ych FMNNitric oxide reductase 1 0.669
1zwl FMNNAD(P)H dehydrogenase (quinone) 1.6.5.2 0.669
1rx0 FADIsobutyryl-CoA dehydrogenase, mitochondrial 1.3.99 0.668
1ycf FMNNitric oxide reductase 1 0.660
3e4v FMNUncharacterized protein / 0.660
1j9z FMNNADPH--cytochrome P450 reductase / 0.654
3g5m FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.652
4qof FMNRibosyldihydronicotinamide dehydrogenase [quinone] / 0.651
1ffu FADCarbon monoxide dehydrogenase medium chain / 0.650
1ycg FMNNitric oxide reductase 1 0.650
2nr4 FMNConserved protein / 0.650
3klb FMNUncharacterized protein / 0.650