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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1c1u BAI Prothrombin 3.4.21.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1c1u BAIProthrombin 3.4.21.5 0.944
1c1w BAHProthrombin 3.4.21.5 0.855
1ghv 120Prothrombin 3.4.21.5 0.744
1o2g 696Prothrombin 3.4.21.5 0.730
1gj4 132Prothrombin 3.4.21.5 0.726
4az2 9MUProthrombin 3.4.21.5 0.710
4baq M4ZProthrombin 3.4.21.5 0.710
3v0x ANHCationic trypsin 3.4.21.4 0.707
2zda 32UProthrombin 3.4.21.5 0.698
1k21 IGNProthrombin 3.4.21.5 0.694
2zhf 49UProthrombin 3.4.21.5 0.688
2zgx 29UProthrombin 3.4.21.5 0.687
2zi2 24UProthrombin 3.4.21.5 0.686
4ban M6SProthrombin 3.4.21.5 0.684
4bao MVFProthrombin 3.4.21.5 0.680
1ny2 ARG_PRO_PRO_GLYProthrombin 3.4.21.5 0.678
2cf9 348Prothrombin 3.4.21.5 0.678
2zp0 PI0Coagulation factor VII 3.4.21.21 0.678
4fud 6UPUrokinase-type plasminogen activator 3.4.21.73 0.678
1c5n ESIProthrombin 3.4.21.5 0.676
4ayy 9MXProthrombin 3.4.21.5 0.676
2v3o I26Prothrombin 3.4.21.5 0.675
4ax9 N5NProthrombin 3.4.21.5 0.673
1o0d 163Prothrombin 3.4.21.5 0.671
1ypm RA4Prothrombin 3.4.21.5 0.671
1sqt UI3Urokinase-type plasminogen activator 3.4.21.73 0.670
4bak M67Prothrombin 3.4.21.5 0.668
2cn0 F25Prothrombin 3.4.21.5 0.666
1c4v IH2Prothrombin 3.4.21.5 0.665
1nzq 162Prothrombin 3.4.21.5 0.663
1vja 7INUrokinase-type plasminogen activator 3.4.21.73 0.662
2zfr 46UProthrombin 3.4.21.5 0.660
3mle ADPATP-dependent dethiobiotin synthetase BioD 6.3.3.3 0.660
4y8v ADPAcyl-CoA synthetase (NDP forming) / 0.660
4z17 PEPEnolase / 0.660
1ype UIPProthrombin 3.4.21.5 0.658
2bok 784Coagulation factor X 3.4.21.6 0.656
1ypj UIBProthrombin 3.4.21.5 0.654
4bah MELProthrombin 3.4.21.5 0.654
4bam MM9Prothrombin 3.4.21.5 0.654
1gj5 130Prothrombin 3.4.21.5 0.651
1kts C24Prothrombin 3.4.21.5 0.650