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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1bob ACO Histone acetyltransferase type B catalytic subunit

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1bob ACOHistone acetyltransferase type B catalytic subunit / 1.219
5kf9 ACOPredicted acetyltransferase / 0.839
5kf8 ACOPredicted acetyltransferase / 0.838
2vez ACOGlucosamine 6-phosphate acetyltransferase, putative / 0.837
1qsm ACOHistone acetyltransferase HPA2 / 0.836
5kgj ACOPredicted acetyltransferase / 0.830
4u9v ACON-alpha-acetyltransferase 40 2.3.1 0.821
5kgp ACOPredicted acetyltransferase / 0.819
2b3v ACODiamine acetyltransferase 1 / 0.814
3exn ACOProbable acetyltransferase / 0.808
5kf2 ACOPredicted acetyltransferase / 0.808
2cns ACORibosomal-protein-alanine acetyltransferase / 0.806
2q4v ACODiamine acetyltransferase 2 2.3.1.57 0.806
1ozp ACOMycothiol acetyltransferase 2.3.1.189 0.798
1kuv CA5Serotonin N-acetyltransferase / 0.787
1cjw COTSerotonin N-acetyltransferase / 0.784
2cy2 ACOProbable acetyltransferase / 0.779
5kf1 ACOPredicted acetyltransferase / 0.779
2fiw ACOGCN5-related N-acetyltransferase:Aminotransferase, class-II / 0.778
2jdc CAOProbable acetyltransferase / 0.778
2fxf ACODiamine acetyltransferase 1 / 0.777
2rc4 ACOHistone acetyltransferase KAT6A / 0.777
2a4n COAAac(6')-Ii protein / 0.773
2jdd ACOProbable acetyltransferase / 0.773
2bei ACODiamine acetyltransferase 2 2.3.1.57 0.770
4kvx ACON-terminal acetyltransferase A complex catalytic subunit ard1 2.3.1.88 0.763
4hkf ACOAlpha-tubulin N-acetyltransferase 1 / 0.762
1i12 ACOGlucosamine 6-phosphate N-acetyltransferase / 0.760
5h84 1VUHistone acetyltransferase KAT2A 2.3.1.48 0.760
1s3z COAAminoglycoside N(6')-acetyltransferase type 1 / 0.759
3gya COAGCN5-related N-acetyltransferase / 0.756
4ava ACOAcetyltransferase Pat 2.3.1 0.756
5kf1 COAPredicted acetyltransferase / 0.756
1bo4 COAAminoglycoside-(3)-N-acetyltransferase / 0.755
3dr8 ACOL-methionine sulfoximine/L-methionine sulfone acetyltransferase / 0.750
3mgd ACOPredicted acetyltransferase / 0.745
5kgh ACOPredicted acetyltransferase / 0.741
1l0c COTSerotonin N-acetyltransferase / 0.737
3s6f COAUncharacterized protein / 0.737
1tiq COASpermidine/spermine N(1)-acetyltransferase / 0.733
2x7b COAN-alpha-acetyltransferase 2.3.1 0.732
4jwp ACOGCN5-related N-acetyltransferase / 0.731
2bue COAAAC(6')-Ib / 0.728
1kuy COTSerotonin N-acetyltransferase / 0.727
2bsw CAOProbable acetyltransferase / 0.723
1mjb ACOHistone acetyltransferase ESA1 / 0.722
4lx9 ACON-alpha-acetyltransferase 2.3.1 0.715
2y0m ACOHistone acetyltransferase KAT8 / 0.712
5kf8 COAPredicted acetyltransferase / 0.712
4u9y COAAlpha-tubulin N-acetyltransferase 1 / 0.711
4psw COAHistone acetyltransferase type B catalytic subunit / 0.710
3k9u ACOSpermidine N(1)-acetyltransferase / 0.706
2r8v ACOAmino-acid acetyltransferase / 0.702
4b5o ACOAlpha-tubulin N-acetyltransferase 1 / 0.698
1s60 COAAminoglycoside N(6')-acetyltransferase type 1 / 0.696
2o28 COAGlucosamine 6-phosphate N-acetyltransferase / 0.695
1ghe ACOAcetyltransferase 2.3.1 0.694
5ag7 MYAGlycylpeptide N-tetradecanoyltransferase / 0.690
2ozu ACOHistone acetyltransferase KAT6A / 0.689
3r95 ACOMccE protein / 0.685
4r87 COASpermidine N(1)-acetyltransferase / 0.683
1s7n COAAcetyl transferase / 0.682
1ib1 COTSerotonin N-acetyltransferase / 0.681
2c27 ACOMycothiol acetyltransferase 2.3.1.189 0.681
4qvt ACOAcetyltransferase YpeA 2.3.1 0.681
2vxk COAGlucosamine 6-phosphate acetyltransferase, putative / 0.680
1p0h ACOMycothiol acetyltransferase 2.3.1.189 0.677
1mj9 COAHistone acetyltransferase ESA1 / 0.676
1fy7 COAHistone acetyltransferase ESA1 / 0.675
3pgp ACOUncharacterized protein / 0.675
1j4j ACOAcetyltransferase 2.3.1 0.674
5kf2 COAPredicted acetyltransferase / 0.674
4ag7 COAGlucosamine 6-phosphate N-acetyltransferase / 0.673
4zm6 ACON-acetyl-beta-D glucosaminidase / 0.671
2b58 COADiamine acetyltransferase 1 / 0.669
1wwz ACOUncharacterized protein / 0.668
4ag9 COAGlucosamine 6-phosphate N-acetyltransferase / 0.668
4kvm SER_ALA_SER_GLU_1XEN-terminal acetyltransferase A complex catalytic subunit ard1 2.3.1.88 0.668
4ri1 ACOUDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase 2.3.1.202 0.667
4xnh ACON-terminal acetyltransferase A complex subunit NAT5 2.3.1 0.666
4gs4 ACOAlpha-tubulin N-acetyltransferase 1 / 0.665
2cnt COARibosomal-protein-alanine acetyltransferase / 0.663
2ou2 ACOHistone acetyltransferase KAT5 / 0.663
2qir COAAminoglycoside 6-N-acetyltransferase type Ib11 / 0.663
5kf9 COAPredicted acetyltransferase / 0.663
3vwd ACOAlpha-tubulin N-acetyltransferase 1 / 0.662
1mja COAHistone acetyltransferase ESA1 / 0.661
1cm0 COAHistone acetyltransferase KAT2B 2.3.1.48 0.658
1m4d COAAminoglycoside 2'-N-acetyltransferase 2.3.1 0.658
1kux CA3Serotonin N-acetyltransferase / 0.657
1p0h COAMycothiol acetyltransferase 2.3.1.189 0.657
2vqy ACOAAC(6')-Ib / 0.657
4ucn MYAGlycylpeptide N-tetradecanoyltransferase / 0.657
3r1k COAN-acetyltransferase Eis / 0.653
3vwe COAAlpha-tubulin N-acetyltransferase 1 / 0.653
2wpw ACOOrf14 / 0.651
3gy9 COAGCN5-related N-acetyltransferase / 0.651
3te4 ACODopamine N-acetyltransferase / 0.651
4kub COAUncharacterized protein / 0.651
4u9z COAAlpha-tubulin N-acetyltransferase 1 / 0.651