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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ahn FMN Flavodoxin 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1ahn FMNFlavodoxin 1 / 1.278
3esz FMNFlavodoxin / 1.070
1j8q FMNFlavodoxin / 1.034
3esy FMNFlavodoxin / 1.002
2v5u FMNFlavodoxin / 0.979
2fx2 FMNFlavodoxin / 0.971
1wsb FMNFlavodoxin / 0.955
1xyv FMNFlavodoxin / 0.952
1ofv FMNFlavodoxin / 0.947
1akr FMNFlavodoxin / 0.933
1czn FMNFlavodoxin / 0.918
1azl FMNFlavodoxin / 0.910
1c7f FMNFlavodoxin / 0.897
3f6s FMNFlavodoxin / 0.889
1akw FMNFlavodoxin / 0.883
2v5v FMNFlavodoxin / 0.869
1j9g FMNFlavodoxin / 0.853
1tll FMNNitric oxide synthase, brain 1.14.13.39 0.840
1aku FMNFlavodoxin / 0.828
1fx1 FMNFlavodoxin / 0.823
1xyy FMNFlavodoxin / 0.815
4oxx FMNCindoxin / 0.811
5xra FMNCannabinoid receptor 1 / 0.811
4h2d FMNNADPH-dependent diflavin oxidoreductase 1 / 0.809
5xr8 FMNCannabinoid receptor 1 / 0.805
5tgz FMNCannabinoid receptor 1 / 0.804
3f6r FMNFlavodoxin / 0.801
4n82 FMNRibonucleotide reductase (NrdI family protein), putative / 0.798
2fcr FMNFlavodoxin / 0.794
2bf4 FMNNADPH--cytochrome P450 reductase / 0.789
2w5u FMNFlavodoxin / 0.787
2mok FMNFlavodoxin 1 / 0.781
1yob FMNFlavodoxin 2 / 0.771
4yao FMNNADPH--cytochrome P450 reductase / 0.761
1amo FMNNADPH--cytochrome P450 reductase / 0.754
3kap FMNFlavodoxin / 0.750
3f90 FMNFlavodoxin / 0.749
2ohh FMNType A flavoprotein FprA 1 0.747
1fue FMNFlavodoxin / 0.745
3qfr FMNNADPH--cytochrome P450 reductase / 0.745
4fx2 FMNFlavodoxin / 0.742
4y7c FMNNADPH--cytochrome P450 reductase / 0.742
3hr4 FMNNitric oxide synthase, inducible 1.14.13.39 0.725
1ja0 FMNNADPH--cytochrome P450 reductase / 0.719
2ohi FMNType A flavoprotein FprA 1 0.717
3qe2 FMNNADPH--cytochrome P450 reductase / 0.717
2bn4 FMNNADPH--cytochrome P450 reductase / 0.712
4bmo FMNProtein NrdI / 0.704
3ojx FMNNADPH--cytochrome P450 reductase / 0.698
4bmp FMNProtein NrdI / 0.698
5fx2 FMNFlavodoxin / 0.696
3kaq FMNFlavodoxin / 0.685
1zwl FMNNAD(P)H dehydrogenase (quinone) 1.6.5.2 0.677
2ohj FMNType A flavoprotein FprA 1 0.676
3n39 FMNProtein NrdI / 0.676
3ojw FMNNADPH--cytochrome P450 reductase / 0.675
2q9u FMNA-type flavoprotein / 0.673
1ja1 FMNNADPH--cytochrome P450 reductase / 0.667
1ycg FMNNitric oxide reductase 1 0.666
2hpv FMNFMN-dependent NADH-azoreductase 1.7 0.665
1bu5 RBFFlavodoxin / 0.662
1ych FMNNitric oxide reductase 1 0.662
3n3b FMNProtein NrdI / 0.659
3n3a FMNProtein NrdI / 0.656
4m0c FMNFMN-dependent NADH-azoreductase 1 / 0.654