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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1a9s NOS Purine nucleoside phosphorylase 2.4.2.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1a9s NOSPurine nucleoside phosphorylase 2.4.2.1 0.899
1a9p 9DIPurine nucleoside phosphorylase 2.4.2.1 0.844
1b8n IMGPurine nucleoside phosphorylase 2.4.2.1 0.807
1v45 3DGPurine nucleoside phosphorylase 2.4.2.1 0.803
1b8o IMHPurine nucleoside phosphorylase 2.4.2.1 0.776
3iex GMPPurine nucleoside phosphorylase / 0.773
3f8w ADNPurine nucleoside phosphorylase / 0.747
1rct NOSPurine nucleoside phosphorylase 2.4.2.1 0.742
2oc9 IMHPurine nucleoside phosphorylase 2.4.2.1 0.728
1sd1 FMCS-methyl-5'-thioadenosine phosphorylase / 0.705
3faz NOSPurine nucleoside phosphorylase / 0.692
2a0x DIHPurine nucleoside phosphorylase 2.4.2.1 0.684
1sd2 MTHS-methyl-5'-thioadenosine phosphorylase / 0.678
1rr6 IMHPurine nucleoside phosphorylase 2.4.2.1 0.675
3k8q 22APurine nucleoside phosphorylase 2.4.2.1 0.675
1rt9 IMHPurine nucleoside phosphorylase 2.4.2.1 0.668
1rfg GMPPurine nucleoside phosphorylase 2.4.2.1 0.656
1rsz DIHPurine nucleoside phosphorylase 2.4.2.1 0.656
2a0y DIHPurine nucleoside phosphorylase 2.4.2.1 0.656
2a0w DIHPurine nucleoside phosphorylase 2.4.2.1 0.652