1.120 Å
X-ray
2012-01-19
Name: | Beta-lactamase |
---|---|
ID: | Q9L5C8_ECOLX |
AC: | Q9L5C8 |
Organism: | Escherichia coli |
Reign: | Bacteria |
TaxID: | 562 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 6.085 |
---|---|
Number of residues: | 33 |
Including | |
Standard Amino Acids: | 27 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 6 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.023 | 398.250 |
% Hydrophobic | % Polar |
---|---|
28.81 | 71.19 |
According to VolSite |
HET Code: | 0JB |
---|---|
Formula: | C15H10N7O |
Molecular weight: | 304.286 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 57.25 % |
Polar Surface area: | 110.54 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 6 |
H-Bond Donors: | 2 |
Rings: | 4 |
Aromatic rings: | 4 |
Anionic atoms: | 1 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 3 |
X | Y | Z |
---|---|---|
26.8644 | 90.187 | -6.76061 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O14 | ND2 | ASN- 104 | 2.85 | 168.21 | H-Bond (Protein Donor) |
C10 | CD1 | TYR- 105 | 3.49 | 0 | Hydrophobic |
C10 | CB | TYR- 105 | 3.77 | 0 | Hydrophobic |
C11 | CB | SER- 130 | 3.81 | 0 | Hydrophobic |
O14 | ND2 | ASN- 132 | 2.97 | 135.79 | H-Bond (Protein Donor) |
C16 | CB | PRO- 167 | 4.04 | 0 | Hydrophobic |
C16 | CB | ASN- 170 | 3.58 | 0 | Hydrophobic |
N4 | OG1 | THR- 235 | 3.47 | 148.02 | H-Bond (Protein Donor) |
N5 | OG1 | THR- 235 | 2.67 | 176.72 | H-Bond (Protein Donor) |
N3 | OG | SER- 237 | 2.7 | 157.21 | H-Bond (Protein Donor) |
N23 | OD1 | ASP- 240 | 2.88 | 144.87 | H-Bond (Ligand Donor) |