scPDB - 3ttj entry

Protein Data Bank Entry:

PDB ID : 3ttj

Resolution :2.100 Å

Experimental Method : X-ray

Deposition Date : 2011-09-14

Activity from ChEMBL: What is pChEMBL ?

	Min	Mean	Median	Standard Deviation	Max	Count
pChEMBL:

List of CHEMBLId :

Binding Site :

Uniprot Annotation

Name:	Mitogen-activated protein kinase 10
ID:	MK10_HUMAN
AC:	P53779
Organism:	Homo sapiens
Reign:	Eukaryota
TaxID:	9606
EC Number:	2.7.11.24

Chains:

Chain Name:	Percentage of Residues within binding site
A	100 %

Ligand binding site composition:

B-Factor:	26.863
Number of residues:	34
Including
Standard Amino Acids:	33
Non Standard Amino Acids:	0
Water Molecules:	1
Cofactors:
Metals:

Cavity properties

Ligandability	Volume (Å3)
1.497	644.625

% Hydrophobic	% Polar
57.59	42.41
According to VolSite

Ligand :

HET Code:	JBI
Formula:	C23H23FN6O
Molecular weight:	418.467 g/mol
DrugBank ID:	-
Buried Surface Area:	67.12 %
Polar Surface area:	76.89 Å2

Number of
H-Bond Acceptors:	6
H-Bond Donors:	2
Rings:	5
Aromatic rings:	4
Anionic atoms:	0
Cationic atoms:	0
Rule of Five Violation:	1
Rotatable Bonds:	6

Mass center Coordinates

X	Y	Z
21.8204	8.64177	31.7811

Binding mode :

What is Poseview ?

2D View
3D View

Image generated by PoseView

Protein

Binding Site

Ligand

Interaction pattern

hydrophobic (CA)

aromatic (CZ)

hydrogen bond acceptor (O)

hydrogen bond acceptor/donor (OG)

hydrogen bond donor (N)

positively ionized (NZ)

negatively ionized (OD1)

metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT

Ligand	Protein		Interaction
Atom	Atom	Residue	Distance (Å)	Angle (°)	Type
C9	CG1	ILE- 70	4.07	0	Hydrophobic	false
C21	CB	ILE- 70	4.22	0	Hydrophobic	false
C22	CD1	ILE- 70	3.93	0	Hydrophobic	false
C6	CG2	VAL- 78	3.86	0	Hydrophobic	false
C8	CG2	VAL- 78	4.41	0	Hydrophobic	false
C9	CB	VAL- 78	3.79	0	Hydrophobic	false
F1	CG1	VAL- 78	3.3	0	Hydrophobic	false
F1	CB	ALA- 91	3.54	0	Hydrophobic	false
C17	CD	LYS- 93	4	0	Hydrophobic	false
C13	CB	LYS- 93	3.67	0	Hydrophobic	false
C16	CD	LYS- 93	4.09	0	Hydrophobic	false
C16	CD1	ILE- 124	3.37	0	Hydrophobic	false
C15	CD1	LEU- 126	4.37	0	Hydrophobic	false
C15	CB	LEU- 144	3.87	0	Hydrophobic	false
F1	CG	MET- 146	4.02	0	Hydrophobic	false
C13	SD	MET- 146	3.72	0	Hydrophobic	false
N1	N	MET- 149	3	165.02	H-Bond (Protein Donor)	false
N5	O	MET- 149	3.16	157.48	H-Bond (Ligand Donor)	false
C11	CB	ASN- 152	4.06	0	Hydrophobic	false
C19	CB	ASN- 152	4.36	0	Hydrophobic	false
O1	NE2	GLN- 155	2.85	148.45	H-Bond (Protein Donor)	false
C12	CG1	VAL- 196	4.12	0	Hydrophobic	false
C18	CG1	VAL- 196	4.33	0	Hydrophobic	false
C12	CD1	LEU- 206	3.74	0	Hydrophobic	false
C17	CD1	LEU- 206	4.07	0	Hydrophobic	false