Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Protein Data Bank Entry:

3h4g

1.850 Å

X-ray

2009-04-20

Interactomes:
Molecular Function:
Binding Site :

Uniprot Annotation

Name:Alcohol dehydrogenase [NADP(+)]
ID:AK1A1_PIG
AC:P50578
Organism:Sus scrofa
Reign:Eukaryota
TaxID:9823
EC Number:1.1.1.2


Chains:

Chain Name:Percentage of Residues
within binding site
A100 %


Ligand binding site composition:

B-Factor:15.571
Number of residues:27
Including
Standard Amino Acids: 25
Non Standard Amino Acids: 1
Water Molecules: 1
Cofactors: NAP
Metals:

Cavity properties

LigandabilityVolume (Å3)
0.228334.125

% Hydrophobic% Polar
58.5941.41
According to VolSite

Ligand :
3h4g_1 Structure
HET Code: FID
Formula: C12H10FN3O4
Molecular weight: 279.224 g/mol
DrugBank ID: DB02021
Buried Surface Area:70.5 %
Polar Surface area: 110.52 Å2
Number of
H-Bond Acceptors: 4
H-Bond Donors: 3
Rings: 3
Aromatic rings: 1
Anionic atoms: 0
Cationic atoms: 0
Rule of Five Violation: 0
Rotatable Bonds: 1

Mass center Coordinates

XYZ
1.9015-27.9593-4.4147


Binding mode :
What is Poseview ?
  • 2D View
  • 3D View
Binding mode
BioSolveIT Image generated by PoseView
Protein
Binding Site
Ligand
Interaction pattern
hydrophobic (CA)
aromatic (CZ)
hydrogen bond acceptor (O)
hydrogen bond acceptor/donor (OG)
hydrogen bond donor (N)
positively ionized (NZ)
negatively ionized (OD1)
metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT
BioSolveIT


LigandProteinInteraction
AtomAtomResidueDistance
(Å)
Angle (°)Type
C8ICH2TRP- 223.940Hydrophobic
C13CG2ILE- 494.250Hydrophobic
F17CG1ILE- 493.740Hydrophobic
F17CD1TYR- 503.930Hydrophobic
N4NE2HIS- 1132.78148.69H-Bond
(Ligand Donor)
C9CZ2TRP- 1144.260Hydrophobic
O6INE1TRP- 1142.87158.74H-Bond
(Protein Donor)
C8ICG2ILE- 2993.630Hydrophobic
C8IC4NNAP- 23504.350Hydrophobic