1.900 Å
X-ray
2009-04-06
Name: | Dihydroorotate dehydrogenase (fumarate) |
---|---|
ID: | Q4QEW7_LEIMA |
AC: | Q4QEW7 |
Organism: | Leishmania major |
Reign: | Eukaryota |
TaxID: | 5664 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 17.828 |
---|---|
Number of residues: | 22 |
Including | |
Standard Amino Acids: | 20 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 1 |
Cofactors: | FMN |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.140 | 421.875 |
% Hydrophobic | % Polar |
---|---|
24.00 | 76.00 |
According to VolSite |
HET Code: | ORO |
---|---|
Formula: | C5H3N2O4 |
Molecular weight: | 155.088 g/mol |
DrugBank ID: | DB02262 |
Buried Surface Area: | 71.37 % |
Polar Surface area: | 98.33 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 4 |
H-Bond Donors: | 2 |
Rings: | 1 |
Aromatic rings: | 0 |
Anionic atoms: | 1 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 1 |
X | Y | Z |
---|---|---|
52.7125 | -21.7677 | -15.1985 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O71 | NZ | LYS- 44 | 2.96 | 154.21 | H-Bond (Protein Donor) |
O71 | NZ | LYS- 44 | 2.96 | 0 | Ionic (Protein Cationic) |
N1 | OD1 | ASN- 68 | 2.95 | 170.46 | H-Bond (Ligand Donor) |
O2 | ND2 | ASN- 68 | 2.97 | 163.78 | H-Bond (Protein Donor) |
O72 | N | GLY- 71 | 2.83 | 142.55 | H-Bond (Protein Donor) |
O71 | N | LEU- 72 | 2.92 | 139.26 | H-Bond (Protein Donor) |
O4 | ND2 | ASN- 128 | 3.01 | 173.76 | H-Bond (Protein Donor) |
N3 | OD1 | ASN- 195 | 2.67 | 173.7 | H-Bond (Ligand Donor) |
O4 | ND2 | ASN- 195 | 2.85 | 158.1 | H-Bond (Protein Donor) |
O2 | OG | SER- 196 | 2.52 | 135.26 | H-Bond (Protein Donor) |