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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3gz3 ORO Dihydroorotate dehydrogenase (fumarate)

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3gz3 ORODihydroorotate dehydrogenase (fumarate) / 0.833
3w1q YRODihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.816
3w23 3RODihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.816
3w1x XRODihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.815
3w2j QRODihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.815
3w2l VRODihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.815
3w2m ZRODihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.813
3w1r MRODihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.812
3w3o ROEDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.809
3w2n RODDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.801
3w1t WRODihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.785
3w2u ROUDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.778
5fi8 ORODihydroorotate dehydrogenase (quinone), mitochondrial 1.3.5.2 0.747
1eyn 2ANUDP-N-acetylglucosamine 1-carboxyvinyltransferase / 0.744
2xvv 9DNSerum albumin / 0.744
3cz0 9ODPheromone-binding protein ASP1 / 0.744
3fo7 IMNPhospholipase A2 VRV-PL-VIIIa / 0.744
4c1f X8ZMetallo-beta-lactamase type 2 / 0.744
4dsb A8SAbscisic acid receptor PYL3 / 0.744
4ivo ACJProtoporphyrinogen oxidase 1.3.3.4 0.744
4kla CHDFerrochelatase, mitochondrial 4.99.1.1 0.744
5dby DIFSerum albumin / 0.744
5dby NPSSerum albumin / 0.744
5jqb IBPEnvelope glycoprotein / 0.744
1rml NTSFibroblast growth factor 1 / 0.660
2qd3 CHDFerrochelatase, mitochondrial 4.99.1.1 0.660