2.800 Å
X-ray
2008-03-24
| Name: | Cytochrome c-type protein |
|---|---|
| ID: | Q72EF4_DESVH |
| AC: | Q72EF4 |
| Organism: | Desulfovibrio vulgaris |
| Reign: | Bacteria |
| TaxID: | 882 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| C | 100 % |
| B-Factor: | 24.801 |
|---|---|
| Number of residues: | 22 |
| Including | |
| Standard Amino Acids: | 21 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.112 | 300.375 |
| % Hydrophobic | % Polar |
|---|---|
| 52.81 | 47.19 |
| According to VolSite | |

| HET Code: | HQO |
|---|---|
| Formula: | C16H21NO2 |
| Molecular weight: | 259.343 g/mol |
| DrugBank ID: | DB07918 |
| Buried Surface Area: | 58.06 % |
| Polar Surface area: | 45.69 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 2 |
| H-Bond Donors: | 1 |
| Rings: | 2 |
| Aromatic rings: | 2 |
| Anionic atoms: | 1 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 6 |
| X | Y | Z |
|---|---|---|
| 36.8988 | 2.666 | -14.6019 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C17 | CE | MET- 34 | 3.68 | 0 | Hydrophobic |
| C11 | CB | THR- 37 | 3.85 | 0 | Hydrophobic |
| C12 | CG2 | THR- 37 | 4.28 | 0 | Hydrophobic |
| C15 | CG2 | THR- 37 | 4.4 | 0 | Hydrophobic |
| C11 | CE2 | PHE- 42 | 3.66 | 0 | Hydrophobic |
| O4 | ND2 | ASN- 67 | 3.08 | 144.6 | H-Bond (Protein Donor) |
| C7 | CB | HIS- 70 | 4.39 | 0 | Hydrophobic |
| C6 | CG | LYS- 82 | 4.46 | 0 | Hydrophobic |
| C13 | CB | LYS- 82 | 4.34 | 0 | Hydrophobic |
| C8 | CB | ALA- 85 | 3.68 | 0 | Hydrophobic |
| O1 | OD2 | ASP- 89 | 2.76 | 150.99 | H-Bond (Ligand Donor) |