2.800 Å
X-ray
2008-03-24
Name: | Cytochrome c-type protein |
---|---|
ID: | Q72EF4_DESVH |
AC: | Q72EF4 |
Organism: | Desulfovibrio vulgaris |
Reign: | Bacteria |
TaxID: | 882 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
C | 100 % |
B-Factor: | 24.801 |
---|---|
Number of residues: | 22 |
Including | |
Standard Amino Acids: | 21 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.112 | 300.375 |
% Hydrophobic | % Polar |
---|---|
52.81 | 47.19 |
According to VolSite |
HET Code: | HQO |
---|---|
Formula: | C16H21NO2 |
Molecular weight: | 259.343 g/mol |
DrugBank ID: | DB07918 |
Buried Surface Area: | 58.06 % |
Polar Surface area: | 45.69 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 2 |
H-Bond Donors: | 1 |
Rings: | 2 |
Aromatic rings: | 2 |
Anionic atoms: | 1 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
36.8988 | 2.666 | -14.6019 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C17 | CE | MET- 34 | 3.68 | 0 | Hydrophobic |
C11 | CB | THR- 37 | 3.85 | 0 | Hydrophobic |
C12 | CG2 | THR- 37 | 4.28 | 0 | Hydrophobic |
C15 | CG2 | THR- 37 | 4.4 | 0 | Hydrophobic |
C11 | CE2 | PHE- 42 | 3.66 | 0 | Hydrophobic |
O4 | ND2 | ASN- 67 | 3.08 | 144.6 | H-Bond (Protein Donor) |
C7 | CB | HIS- 70 | 4.39 | 0 | Hydrophobic |
C6 | CG | LYS- 82 | 4.46 | 0 | Hydrophobic |
C13 | CB | LYS- 82 | 4.34 | 0 | Hydrophobic |
C8 | CB | ALA- 85 | 3.68 | 0 | Hydrophobic |
O1 | OD2 | ASP- 89 | 2.76 | 150.99 | H-Bond (Ligand Donor) |