2.100 Å
X-ray
2004-04-24
Name: | Carbamoyl-phosphate synthase large chain |
---|---|
ID: | CARB_ECOLI |
AC: | P00968 |
Organism: | Escherichia coli |
Reign: | Bacteria |
TaxID: | 83333 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
G | 100 % |
B-Factor: | 31.624 |
---|---|
Number of residues: | 37 |
Including | |
Standard Amino Acids: | 34 |
Non Standard Amino Acids: | 2 |
Water Molecules: | 1 |
Cofactors: | |
Metals: | MN K |
Ligandability | Volume (Å3) |
---|---|
0.076 | 303.750 |
% Hydrophobic | % Polar |
---|---|
60.00 | 40.00 |
According to VolSite |
HET Code: | ADP |
---|---|
Formula: | C10H12N5O10P2 |
Molecular weight: | 424.177 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 85.27 % |
Polar Surface area: | 260.7 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 14 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 3 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
19.707 | -16.0147 | -14.1459 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O1A | NH2 | ARG- 715 | 2.55 | 155.74 | H-Bond (Protein Donor) |
O1A | CZ | ARG- 715 | 3.56 | 0 | Ionic (Protein Cationic) |
C5' | CE | MET- 725 | 4.25 | 0 | Hydrophobic |
N6 | O | HIS- 754 | 3.02 | 145.45 | H-Bond (Ligand Donor) |
N1 | N | LEU- 756 | 3.04 | 167.57 | H-Bond (Protein Donor) |
O2' | N | GLY- 786 | 2.85 | 170.56 | H-Bond (Protein Donor) |
O1B | NE2 | HIS- 788 | 2.95 | 165.19 | H-Bond (Protein Donor) |
O3' | N | SER- 789 | 3.05 | 148.08 | H-Bond (Protein Donor) |
C3' | CG2 | ILE- 840 | 4.4 | 0 | Hydrophobic |
O3B | MN | MN- 1079 | 2.03 | 0 | Metal Acceptor |
O2A | MN | MN- 1079 | 2.04 | 0 | Metal Acceptor |