2.100 Å
X-ray
1997-03-25
Name: | Carbamoyl-phosphate synthase large chain |
---|---|
ID: | CARB_ECOLI |
AC: | P00968 |
Organism: | Escherichia coli |
Reign: | Bacteria |
TaxID: | 83333 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
H | 100 % |
B-Factor: | 39.508 |
---|---|
Number of residues: | 37 |
Including | |
Standard Amino Acids: | 33 |
Non Standard Amino Acids: | 3 |
Water Molecules: | 1 |
Cofactors: | |
Metals: | MN MN K |
Ligandability | Volume (Å3) |
---|---|
0.119 | 307.125 |
% Hydrophobic | % Polar |
---|---|
57.14 | 42.86 |
According to VolSite |
HET Code: | ADP |
---|---|
Formula: | C10H12N5O10P2 |
Molecular weight: | 424.177 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 66.12 % |
Polar Surface area: | 260.7 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 14 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 3 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
82.7272 | 85.2593 | 10.2361 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O1A | NH2 | ARG- 714 | 3.01 | 153.99 | H-Bond (Protein Donor) |
C5' | CE | MET- 724 | 3.72 | 0 | Hydrophobic |
N6 | O | HIS- 753 | 3.46 | 130.83 | H-Bond (Ligand Donor) |
N1 | N | LEU- 755 | 3.21 | 160.48 | H-Bond (Protein Donor) |
O3' | OE2 | GLU- 760 | 2.74 | 163.89 | H-Bond (Ligand Donor) |
O2' | OE1 | GLU- 760 | 2.87 | 170.88 | H-Bond (Ligand Donor) |
O2' | N | GLY- 785 | 2.69 | 152.42 | H-Bond (Protein Donor) |
O1B | NE2 | HIS- 787 | 3.21 | 161.34 | H-Bond (Protein Donor) |
O3B | NE2 | HIS- 787 | 3.07 | 132.73 | H-Bond (Protein Donor) |
O3' | N | SER- 788 | 3.33 | 155.47 | H-Bond (Protein Donor) |
O3B | MN | MN- 1079 | 2.36 | 0 | Metal Acceptor |
O2A | MN | MN- 1079 | 2.17 | 0 | Metal Acceptor |
O2B | MN | MN- 1080 | 2.67 | 0 | Metal Acceptor |
O3B | O | HOH- 1122 | 2.98 | 151.44 | H-Bond (Protein Donor) |