Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1jdb ADP Carbamoyl-phosphate synthase large chain

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1jdb ADPCarbamoyl-phosphate synthase large chain / 0.970
1t36 ADPCarbamoyl-phosphate synthase large chain / 0.782
4c5b ADPD-alanine--D-alanine ligase B 6.3.2.4 0.740
4iai ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.727
1a9x ADPCarbamoyl-phosphate synthase large chain / 0.724
3x2w ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.719
4dh5 ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.704
4c5c ATPD-alanine--D-alanine ligase B 6.3.2.4 0.691
3fjq ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.690
4iad ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.687
3x2v ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.685
4ocp ADPN-acetylhexosamine 1-kinase 2.7.1.162 0.685
4xw5 ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.684
5awm ANPStress-activated protein kinase JNK 2.7.11.24 0.683
2phk ATPPhosphorylase b kinase gamma catalytic chain, skeletal muscle/heart isoform 2.7.11.19 0.678
1z2n ADPInositol-tetrakisphosphate 1-kinase 2.7.1.134 0.677
3t9e ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.675
3niz ADPCdc2-like CDK2/CDC28 like protein kinase / 0.671
4f9a ADPCell division cycle 7-related protein kinase 2.7.11.1 0.669
3akk ADPSerine/threonine-protein kinase CtkA 2.7.11.1 0.667
4wh2 ADPN-acetylhexosamine 1-kinase 2.7.1.162 0.664
3tw6 ADPPyruvate carboxylase / 0.660
4iaf ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.660
4uak ADPSerine/threonine-protein kinase MRCK beta 2.7.11.1 0.660
2pyw ADPMethylthioribose kinase 2.7.1.100 0.659
4ii5 ADPCyclin-dependent kinase 2 2.7.11.22 0.658
4mwh ATPCasein kinase II subunit alpha 2.7.11.1 0.658
4s33 ANPMitogen-activated protein kinase 1 2.7.11.24 0.658
4fi1 ATPCasein kinase II subunit alpha 2.7.11.1 0.657
4eom ATPCyclin-dependent kinase 2 2.7.11.22 0.656
4oa9 ANPProtein BRASSINOSTEROID INSENSITIVE 1 2.7.10.1 0.656
2io9 ADPBifunctional glutathionylspermidine synthetase/amidase / 0.655
4wb6 ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.655
3cly ACPFibroblast growth factor receptor 2 / 0.652
1j7l ADPAminoglycoside 3'-phosphotransferase 2.7.1.95 0.651
1m0w ANPGlutathione synthetase 6.3.2.3 0.650