sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 5ewk | P34 | Putative secreted protein |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 5ewk | P34 | Putative secreted protein | / | 1.000 | |
| 3otw | COA | Phosphopantetheine adenylyltransferase | / | 0.469 | |
| 5ero | 210 | Fusicoccadiene synthase | 2.5.1.29 | 0.463 | |
| 4wx2 | F6F | Tryptophan synthase alpha chain | / | 0.461 | |
| 4wx2 | F6F | Tryptophan synthase beta chain | 4.2.1.20 | 0.461 | |
| 4zqc | F6F | Tryptophan synthase alpha chain | / | 0.461 | |
| 1og4 | NAI | T-cell ecto-ADP-ribosyltransferase 2 | / | 0.460 | |
| 4bft | ZVT | Pantothenate kinase | 2.7.1.33 | 0.459 | |
| 1uae | UD1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | / | 0.458 | |
| 1d3d | BZT | Prothrombin | 3.4.21.5 | 0.457 | |
| 4e2y | JHZ | Methyltransferase | / | 0.453 | |
| 1og1 | TAD | T-cell ecto-ADP-ribosyltransferase 2 | / | 0.452 | |
| 3g5i | DNB | Pyrimidine-specific ribonucleoside hydrolase RihA | / | 0.446 | |
| 4fsl | 0VB | Beta-secretase 1 | 3.4.23.46 | 0.444 | |
| 2q1w | NAD | Putative nucleotide sugar epimerase/ dehydratase | / | 0.442 | |
| 1d3p | BT3 | Prothrombin | 3.4.21.5 | 0.441 | |
| 3rtn | RTN | Beta-secretase 1 | 3.4.23.46 | 0.441 | |
| 5dp2 | NAP | CurF | / | 0.441 |