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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5c7oNADGlyceraldehyde-3-phosphate dehydrogenase, testis-specific1.2.1.12

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
5c7oNADGlyceraldehyde-3-phosphate dehydrogenase, testis-specific1.2.1.121.000
4lsmNADGlyceraldehyde-3-phosphate dehydrogenase/0.589
1u8fNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.528
1dc6NADGlyceraldehyde-3-phosphate dehydrogenase A/0.523
2vyvNADGlyceraldehyde-3-phosphate dehydrogenase A/0.521
4dbvNDPGlyceraldehyde-3-phosphate dehydrogenase/0.519
1jn0NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.516
2vynNADGlyceraldehyde-3-phosphate dehydrogenase A/0.510
4z0hNADGlyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic1.2.1.120.509
3l0dNADGlyceraldehyde-3-phosphate dehydrogenase/0.498
4boyNADGlyceraldehyde-3-phosphate dehydrogenase/0.498
1gd1NADGlyceraldehyde-3-phosphate dehydrogenase/0.496
1rm4NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.494
1dbvNADGlyceraldehyde-3-phosphate dehydrogenase/0.492
3v1yNADGlyceraldehyde-3-phosphate dehydrogenase 1, cytosolic1.2.1.120.492
3hjaNADGlyceraldehyde-3-phosphate dehydrogenase/0.490
3e5rNADGlyceraldehyde-3-phosphate dehydrogenase 1, cytosolic1.2.1.120.489
1vc2NADGlyceraldehyde-3-phosphate dehydrogenase/0.488
1rm5NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.486
4o59NADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.486
2dbvNDPGlyceraldehyde-3-phosphate dehydrogenase/0.477
3cpsNADGlyceraldehyde-3-phosphate dehydrogenase/0.474
2ep7NADGlyceraldehyde-3-phosphate dehydrogenase/0.473
1ywgNADGlyceraldehyde-3-phosphate dehydrogenase/0.472
3k2bNADGlyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic1.2.1.130.472
4p8rNADGlyceraldehyde-3-phosphate dehydrogenase/0.472
3cmcNADGlyceraldehyde-3-phosphate dehydrogenase/0.470
3gnqNADGlyceraldehyde-3-phosphate dehydrogenase/0.470
1qxsNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.467
4k9dNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.467
1ihxSNDGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.464
3dbvNADGlyceraldehyde-3-phosphate dehydrogenase/0.464
3zcxNADGlyceraldehyde-3-phosphate dehydrogenase/0.462
3ksdNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.461
1hdgNADGlyceraldehyde-3-phosphate dehydrogenase/0.457
1nboNADGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.456
1rm3NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.455
1nqaNADGlyceraldehyde-3-phosphate dehydrogenase/0.450
1znqNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.450
1szjNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.449
4o63NADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.449
3idsNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.446
1a7kNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.444
3docNADGlyceraldehyde-3-phosphate dehydrogenase/0.441