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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5ag4MYAGlycylpeptide N-tetradecanoyltransferase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
5ag4MYAGlycylpeptide N-tetradecanoyltransferase/1.000
2wsaMYAGlycylpeptide N-tetradecanoyltransferase/0.659
4a33MYAGlycylpeptide N-tetradecanoyltransferase/0.656
4bbhNHWGlycylpeptide N-tetradecanoyltransferase/0.573
3up0D7SaceDAF-12/0.455
2vcmM11Isopenicillin N synthase1.21.3.10.453
3upf0BUPolyprotein/0.451
2y1oT26UDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.447
3qdd94MHeat shock protein HSP 90-alpha/0.447
1xq6NAPUncharacterized protein At5g02240/0.445
2gmvPEPPhosphoenolpyruvate carboxykinase, cytosolic [GTP]4.1.1.320.443
2i4pDRHPeroxisome proliferator-activated receptor gamma/0.443
3ijdC2FMethylenetetrahydrofolate reductase/0.442
3oquA8SAbscisic acid receptor PYL9/0.442
1g6cIFPThiamine-phosphate synthase/0.441
1uykPUXHeat shock protein HSP 90-alpha/0.441
4hy6FJ1Heat shock protein HSP 90-alpha/0.441
4wucANPDNA gyrase subunit B/0.441
3njoPYVAbscisic acid receptor PYR1/0.440
4y9uNAPNADPH--cytochrome P450 reductase/0.440