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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4v010LIFibroblast growth factor receptor 1 (Fms-related tyrosine kinase 2, Pfeiffer syndrome), isoform CRA_b

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4v010LIFibroblast growth factor receptor 1 (Fms-related tyrosine kinase 2, Pfeiffer syndrome), isoform CRA_b/1.000
4uxq0LIFibroblast growth factor receptor 42.7.10.10.535
4f650S9Fibroblast growth factor receptor 1/0.497
3js2VM1Fibroblast growth factor receptor 1/0.492
4tyj0LIFibroblast growth factor receptor 42.7.10.10.472
4nk92K5Fibroblast growth factor receptor 1/0.456
5bvw1N1Epithelial discoidin domain-containing receptor 12.7.10.10.456
1fgiSU1Fibroblast growth factor receptor 1/0.444