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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4o59NADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.12

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4o59NADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.121.000
3e5rNADGlyceraldehyde-3-phosphate dehydrogenase 1, cytosolic1.2.1.120.667
1ml3NADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.626
4k9dNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.611
1znqNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.597
3ksdNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.590
3cpsNADGlyceraldehyde-3-phosphate dehydrogenase/0.585
4p8rNADGlyceraldehyde-3-phosphate dehydrogenase/0.580
3cifNADGlyceraldehyde-3-phosphate dehydrogenase/0.579
3l4sNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.556
1a7kNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.553
2vynNADGlyceraldehyde-3-phosphate dehydrogenase A/0.551
1gd1NADGlyceraldehyde-3-phosphate dehydrogenase/0.550
3cmcNADGlyceraldehyde-3-phosphate dehydrogenase/0.548
3lvfNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.544
1gypNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.543
3dmtNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.543
1u8fNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.542
1nptNADGlyceraldehyde-3-phosphate dehydrogenase/0.540
1qxsNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.538
3dbvNADGlyceraldehyde-3-phosphate dehydrogenase/0.538
3idsNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.536
3hjaNADGlyceraldehyde-3-phosphate dehydrogenase/0.533
3k2bNADGlyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic1.2.1.130.529
3docNADGlyceraldehyde-3-phosphate dehydrogenase/0.514
1nqaNADGlyceraldehyde-3-phosphate dehydrogenase/0.513
2vyvNADGlyceraldehyde-3-phosphate dehydrogenase A/0.513
3b20NADGlyceraldehyde-3-phosphate dehydrogenase/0.510
2pkrNDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.491
1dssNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.482
1nboNADGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.473
1rm5NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.466
4z0hNADGlyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic1.2.1.120.465
1dbvNADGlyceraldehyde-3-phosphate dehydrogenase/0.462
4lsmNADGlyceraldehyde-3-phosphate dehydrogenase/0.461
1rm4NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.453
1rm3NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.451
1nq5NADGlyceraldehyde-3-phosphate dehydrogenase/0.450
5c7oNADGlyceraldehyde-3-phosphate dehydrogenase, testis-specific1.2.1.120.442