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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4k43ADPActin, alpha skeletal muscle

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4k43ADPActin, alpha skeletal muscle/1.000
3el2ATPActin-5C/0.605
1rgiATPActin, alpha skeletal muscle/0.593
4k41ATPActin, alpha skeletal muscle/0.580
4pkgATPActin, alpha skeletal muscle/0.576
1eqyATPActin, alpha skeletal muscle/0.571
3tu5ATPActin, alpha skeletal muscle/0.569
1s22ATPActin, alpha skeletal muscle/0.561
1t44ATPActin, alpha skeletal muscle/0.559
3u9dATPActin, alpha skeletal muscle/0.559
4k42ADPActin, alpha skeletal muscle/0.559
4jhdANPActin-5C/0.554
2q36ATPActin, alpha skeletal muscle/0.540
1ijjATPActin, alpha skeletal muscle/0.539
3eksATPActin-5C/0.539
3dawATPActin, alpha skeletal muscle/0.538
1nm1ATPMajor actin/0.528
1yxqATPActin, alpha skeletal muscle/0.524
1qz5ATPActin, alpha skeletal muscle/0.518
1mduATPActin, alpha skeletal muscle/0.517
3mn7ATPActin-5C/0.512
1dejATPMajor actin/0.506
4cbxATPActin-2/0.501
4ci6ATPActin/0.501
2q97ATPActin, alpha skeletal muscle/0.496
4pl8ATPActin, alpha skeletal muscle/0.494
2p9kATPActin-related protein 2/0.489
2oanATPActin, cytoplasmic 1/0.485