Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4jtdNAPVoltage-gated potassium channel subunit beta-2

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4jtdNAPVoltage-gated potassium channel subunit beta-2/1.000
4jtcNAPVoltage-gated potassium channel subunit beta-2/0.853
3lnmNAPVoltage-gated potassium channel subunit beta-2/0.596
4jtaNAPVoltage-gated potassium channel subunit beta-2/0.558
2r9rNAPVoltage-gated potassium channel subunit beta-2/0.509
4aubNAPL-glyceraldehyde 3-phosphate reductase1.1.10.508
2clpNDPAflatoxin B1 aldehyde reductase member 3/0.490
1lqaNDPProtein tas/0.483
3h7uNAPNADPH-dependent aldo-keto reductase, chloroplastic/0.474
3v36NAPAldose reductase1.1.1.210.474
4g5dNDPProstaglandin F synthase1.1.1.1880.474
1az2NAPAldose reductase1.1.1.210.472
1adsNAPAldose reductase1.1.1.210.467
3q67NAPAldose reductase1.1.1.210.467
2iq0NAPAldose reductase1.1.1.210.466
2acqNAPAldose reductase1.1.1.210.464
2pfhNDPAldose reductase1.1.1.210.463
2c91NAPAflatoxin B1 aldehyde reductase member 2/0.458
1ah4NAPAldose reductase1.1.1.210.457
2j8tNAPAldose reductase1.1.1.210.457
1x98NAPAldose reductase1.1.1.210.455
1pz1NAPGeneral stress protein 69/0.454
1x96NAPAldose reductase1.1.1.210.452
3qkzNAPAldose reductase-related protein 11.1.1.210.450
3o3rNAPAldose reductase-related protein 11.1.1.210.447
1c9wNAPAldose reductase-related protein 2/0.445
1z8aNAPAldose reductase1.1.1.210.445
2pevNDPAldose reductase1.1.1.210.444
3caqNDP3-oxo-5-beta-steroid 4-dehydrogenase/0.444
2pf8NDPAldose reductase1.1.1.210.441
2hejNDPAldo-keto reductase family 1 member C211.1.10.440