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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4jtcNAPVoltage-gated potassium channel subunit beta-2

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4jtcNAPVoltage-gated potassium channel subunit beta-2/1.000
4jtdNAPVoltage-gated potassium channel subunit beta-2/0.784
3lnmNAPVoltage-gated potassium channel subunit beta-2/0.618
4jtaNAPVoltage-gated potassium channel subunit beta-2/0.541
4aubNAPL-glyceraldehyde 3-phosphate reductase1.1.10.513
2r9rNAPVoltage-gated potassium channel subunit beta-2/0.495
1lqaNDPProtein tas/0.474
2clpNDPAflatoxin B1 aldehyde reductase member 3/0.472
3v36NAPAldose reductase1.1.1.210.465
2iq0NAPAldose reductase1.1.1.210.453
2pfhNDPAldose reductase1.1.1.210.451
3h7uNAPNADPH-dependent aldo-keto reductase, chloroplastic/0.449
2acqNAPAldose reductase1.1.1.210.448
1adsNAPAldose reductase1.1.1.210.444
2pevNDPAldose reductase1.1.1.210.444
2pf8NDPAldose reductase1.1.1.210.444
1ah4NAPAldose reductase1.1.1.210.442
3q67NAPAldose reductase1.1.1.210.442
4g5dNDPProstaglandin F synthase1.1.1.1880.441