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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ih71ERGenome polyprotein2.7.7.48

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4ih71ERGenome polyprotein2.7.7.481.000
2gc8885Polyprotein/0.648
3tyvHI3Genome polyprotein2.7.7.480.623
3cwj321Genome polyprotein2.7.7.480.615
4ih61EPGenome polyprotein2.7.7.480.595
3gynB42Genome polyprotein2.7.7.480.592
2giqNN2Genome polyprotein2.7.7.480.590
3cdeN3HGenome polyprotein2.7.7.480.582
3uph0C1Genome polyprotein2.7.7.480.571
3h59H59Genome polyprotein2.7.7.480.533
3golXNDGenome polyprotein2.7.7.480.532
3csoXNIGenome polyprotein2.7.7.480.529
3d5m4MSGenome polyprotein2.7.7.480.521
2fvc888Polyprotein/0.511
3bsa1PDGenome polyprotein2.7.7.480.509
4mk728OGenome polyprotein2.7.7.480.508
3e51N35Genome polyprotein2.7.7.480.505
3ska053Genome polyprotein2.7.7.480.503
3upi0C2Genome polyprotein2.7.7.480.502
4iz02BIGenome polyprotein2.7.7.480.496
3co93MSGenome polyprotein2.7.7.480.495
3d28B34Genome polyprotein2.7.7.480.493
3ske054Genome polyprotein2.7.7.480.493
3g86T18Genome polyprotein2.7.7.480.490
4mk928RGenome polyprotein2.7.7.480.490
1z4uPH9Polyprotein/0.486
3cvkN34Genome polyprotein2.7.7.480.483
3h98B5PGenome polyprotein2.7.7.480.474
3fqk79ZGenome polyprotein2.7.7.480.469
3h5sH5SGenome polyprotein2.7.7.480.468
4eaw0NQGenome polyprotein2.7.7.480.465
3gnwXNCGenome polyprotein2.7.7.480.459
3h5uH5UGenome polyprotein2.7.7.480.458
3gnvXNZGenome polyprotein2.7.7.480.452