sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 4guy | KLJ | Macrophage metalloelastase | 3.4.24.65 |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 4guy | KLJ | Macrophage metalloelastase | 3.4.24.65 | 1.000 | |
| 2hu6 | 37A | Macrophage metalloelastase | 3.4.24.65 | 0.711 | |
| 1utt | CP8 | Macrophage metalloelastase | 3.4.24.65 | 0.693 | |
| 3ljg | EEF | Macrophage metalloelastase | 3.4.24.65 | 0.689 | |
| 4gr8 | R4C | Macrophage metalloelastase | 3.4.24.65 | 0.645 | |
| 3lil | EEA | Macrophage metalloelastase | 3.4.24.65 | 0.643 | |
| 2oxw | ILE_ALA_GLY | Macrophage metalloelastase | 3.4.24.65 | 0.642 | |
| 2woa | 576 | Macrophage metalloelastase | 3.4.24.65 | 0.638 | |
| 2wo8 | 077 | Macrophage metalloelastase | 3.4.24.65 | 0.632 | |
| 4g9l | NGH | Stromelysin-1 | 3.4.24.17 | 0.620 | |
| 4gr3 | R45 | Macrophage metalloelastase | 3.4.24.65 | 0.619 | |
| 4gql | R47 | Macrophage metalloelastase | 3.4.24.65 | 0.614 | |
| 3kry | 3KR | Collagenase 3 | 3.4.24 | 0.611 | |
| 3kec | 3KE | Collagenase 3 | 3.4.24 | 0.610 | |
| 4h76 | 10B | Macrophage metalloelastase | 3.4.24.65 | 0.608 | |
| 1hy7 | MBS | Stromelysin-1 | 3.4.24.17 | 0.606 | |
| 3i7i | 518 | Collagenase 3 | 3.4.24 | 0.605 | |
| 2w0d | CGS | Macrophage metalloelastase | 3.4.24.65 | 0.600 | |
| 3lik | EEG | Macrophage metalloelastase | 3.4.24.65 | 0.597 | |
| 4i03 | L88 | Macrophage metalloelastase | 3.4.24.65 | 0.585 | |
| 2wo9 | 068 | Macrophage metalloelastase | 3.4.24.65 | 0.584 | |
| 3ts4 | EEG | Macrophage metalloelastase | 3.4.24.65 | 0.578 | |
| 3i7g | 732 | Collagenase 3 | 3.4.24 | 0.574 | |
| 1caq | DPS | Stromelysin-1 | 3.4.24.17 | 0.572 | |
| 2ovx | 4MR | Matrix metalloproteinase-9 | 3.4.24.35 | 0.572 | |
| 2yig | 5EL | Collagenase 3 | 3.4.24 | 0.571 | |
| 4a7b | 3W4 | Collagenase 3 | 3.4.24 | 0.570 | |
| 4gr0 | R4B | Macrophage metalloelastase | 3.4.24.65 | 0.567 | |
| 4a7b | 3W5 | Collagenase 3 | 3.4.24 | 0.565 | |
| 3tsk | QEG | Macrophage metalloelastase | 3.4.24.65 | 0.561 | |
| 1bqo | N25 | Stromelysin-1 | 3.4.24.17 | 0.556 | |
| 1ztq | 033 | Collagenase 3 | 3.4.24 | 0.554 | |
| 3zxh | E41 | Collagenase 3 | 3.4.24 | 0.554 | |
| 1xuc | PB3 | Collagenase 3 | 3.4.24 | 0.549 | |
| 1b8y | IN7 | Stromelysin-1 | 3.4.24.17 | 0.547 | |
| 1g49 | 111 | Stromelysin-1 | 3.4.24.17 | 0.546 | |
| 2ow9 | SP6 | Collagenase 3 | 3.4.24 | 0.543 | |
| 1d8m | BBH | Stromelysin-1 | 3.4.24.17 | 0.542 | |
| 3kek | 3EK | Collagenase 3 | 3.4.24 | 0.542 | |
| 4dpe | NGH | Stromelysin-1 | 3.4.24.17 | 0.542 | |
| 1biw | S80 | Stromelysin-1 | 3.4.24.17 | 0.539 | |
| 1sln | INH | Stromelysin-1 | 3.4.24.17 | 0.536 | |
| 2ow0 | 6MR | Matrix metalloproteinase-9 | 3.4.24.35 | 0.535 | |
| 1zvx | FIN | Neutrophil collagenase | 3.4.24.34 | 0.534 | |
| 2ow1 | 7MR | Matrix metalloproteinase-9 | 3.4.24.35 | 0.531 | |
| 3kej | 3EJ | Collagenase 3 | 3.4.24 | 0.531 | |
| 1xur | PB5 | Collagenase 3 | 3.4.24 | 0.530 | |
| 1gkc | NFH | Matrix metalloproteinase-9 | 3.4.24.35 | 0.529 | |
| 1d7x | SPC | Stromelysin-1 | 3.4.24.17 | 0.527 | |
| 2ovz | 5MR | Matrix metalloproteinase-9 | 3.4.24.35 | 0.527 | |
| 1g05 | BBH | Stromelysin-1 | 3.4.24.17 | 0.524 | |
| 1you | PFD | Collagenase 3 | 3.4.24 | 0.524 | |
| 1ciz | DPS | Stromelysin-1 | 3.4.24.17 | 0.523 | |
| 2ow2 | 8MR | Matrix metalloproteinase-9 | 3.4.24.35 | 0.523 | |
| 1c8t | TR1 | Stromelysin-1 | 3.4.24.17 | 0.522 | |
| 2d1n | FA4 | Collagenase 3 | 3.4.24 | 0.519 | |
| 1xud | PB4 | Collagenase 3 | 3.4.24 | 0.513 | |
| 3o2x | 3O2 | Collagenase 3 | 3.4.24 | 0.513 | |
| 1d8f | SPI | Stromelysin-1 | 3.4.24.17 | 0.505 | |
| 2wo8 | 023 | Macrophage metalloelastase | 3.4.24.65 | 0.503 | |
| 4ja1 | NGH | Stromelysin-1 | 3.4.24.17 | 0.500 | |
| 1b3d | S27 | Stromelysin-1 | 3.4.24.17 | 0.499 | |
| 2wo9 | 023 | Macrophage metalloelastase | 3.4.24.65 | 0.496 | |
| 2woa | 023 | Macrophage metalloelastase | 3.4.24.65 | 0.493 | |
| 1mnc | PLH | Neutrophil collagenase | 3.4.24.34 | 0.492 | |
| 1d5j | MM3 | Stromelysin-1 | 3.4.24.17 | 0.484 | |
| 1hv5 | RXP | Stromelysin-3 | 3.4.24 | 0.482 | |
| 2d1o | FA4 | Stromelysin-1 | 3.4.24.17 | 0.482 | |
| 1hov | I52 | 72 kDa type IV collagenase | 3.4.24.24 | 0.473 | |
| 3oho | Z79 | Stromelysin-1 | 3.4.24.17 | 0.472 | |
| 1xl8 | 152 | Peroxisomal carnitine O-octanoyltransferase | 2.3.1.137 | 0.460 | |
| 4bfx | ZVX | Pantothenate kinase | 2.7.1.33 | 0.460 | |
| 4l4x | NDP | AmphI | / | 0.455 | |
| 3uyl | TYD | Probable NDP-rhamnosyltransferase | / | 0.451 | |
| 1n5d | NDP | Carbonyl reductase [NADPH] 1 | / | 0.450 | |
| 1jtv | TES | Estradiol 17-beta-dehydrogenase 1 | 1.1.1.62 | 0.447 | |
| 2g1r | 3IG | Renin | 3.4.23.15 | 0.447 | |
| 2gev | COK | Pantothenate kinase | 2.7.1.33 | 0.447 | |
| 3d91 | REM | Renin | 3.4.23.15 | 0.446 | |
| 4bft | ZVT | Pantothenate kinase | 2.7.1.33 | 0.445 | |
| 2dgn | DOI | Adenylosuccinate synthetase isozyme 1 | / | 0.444 | |
| 2psw | COA | N-alpha-acetyltransferase 50 | / | 0.443 | |
| 2y99 | NAD | Cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | 1.3.1.56 | 0.443 | |
| 4xoi | GTP | Transforming protein RhoA | / | 0.442 | |
| 2yq9 | 2AM | 2',3'-cyclic-nucleotide 3'-phosphodiesterase | 3.1.4.37 | 0.440 | |
| 3owa | FAD | Acyl-CoA dehydrogenase | / | 0.440 |