1.950 Å
X-ray
2009-07-08
Name: | Collagenase 3 |
---|---|
ID: | MMP13_HUMAN |
AC: | P45452 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | 3.4.24 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 21.087 |
---|---|
Number of residues: | 26 |
Including | |
Standard Amino Acids: | 25 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 0 |
Cofactors: | |
Metals: | ZN |
Ligandability | Volume (Å3) |
---|---|
0.899 | 405.000 |
% Hydrophobic | % Polar |
---|---|
46.67 | 53.33 |
According to VolSite |
HET Code: | 732 |
---|---|
Formula: | C20H23ClN2O3 |
Molecular weight: | 374.861 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 55.5 % |
Polar Surface area: | 71.34 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 2 |
H-Bond Donors: | 2 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 5 |
X | Y | Z |
---|---|---|
-6.59354 | 29.5913 | 54.6807 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
N20 | O | GLY- 183 | 3.14 | 166.6 | H-Bond (Ligand Donor) |
C26 | CD2 | LEU- 184 | 4.49 | 0 | Hydrophobic |
O14 | N | LEU- 185 | 3.08 | 165.63 | H-Bond (Protein Donor) |
C1 | CG2 | VAL- 219 | 4.24 | 0 | Hydrophobic |
DuAr | DuAr | HIS- 222 | 3.97 | 0 | Aromatic Face/Face |
C1 | CB | HIS- 222 | 3.63 | 0 | Hydrophobic |
CL8 | CD1 | LEU- 239 | 4.12 | 0 | Hydrophobic |
C23 | CG1 | ILE- 243 | 4.26 | 0 | Hydrophobic |
O19 | N | TYR- 244 | 3.25 | 172.49 | H-Bond (Protein Donor) |
C2 | CB | TYR- 244 | 4.41 | 0 | Hydrophobic |