1.950 Å
X-ray
2009-07-08
| Name: | Collagenase 3 |
|---|---|
| ID: | MMP13_HUMAN |
| AC: | P45452 |
| Organism: | Homo sapiens |
| Reign: | Eukaryota |
| TaxID: | 9606 |
| EC Number: | 3.4.24 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 21.087 |
|---|---|
| Number of residues: | 26 |
| Including | |
| Standard Amino Acids: | 25 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | ZN |
| Ligandability | Volume (Å3) |
|---|---|
| 0.899 | 405.000 |
| % Hydrophobic | % Polar |
|---|---|
| 46.67 | 53.33 |
| According to VolSite | |

| HET Code: | 732 |
|---|---|
| Formula: | C20H23ClN2O3 |
| Molecular weight: | 374.861 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 55.5 % |
| Polar Surface area: | 71.34 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 2 |
| H-Bond Donors: | 2 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 5 |
| X | Y | Z |
|---|---|---|
| -6.59354 | 29.5913 | 54.6807 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| N20 | O | GLY- 183 | 3.14 | 166.6 | H-Bond (Ligand Donor) |
| C26 | CD2 | LEU- 184 | 4.49 | 0 | Hydrophobic |
| O14 | N | LEU- 185 | 3.08 | 165.63 | H-Bond (Protein Donor) |
| C1 | CG2 | VAL- 219 | 4.24 | 0 | Hydrophobic |
| DuAr | DuAr | HIS- 222 | 3.97 | 0 | Aromatic Face/Face |
| C1 | CB | HIS- 222 | 3.63 | 0 | Hydrophobic |
| CL8 | CD1 | LEU- 239 | 4.12 | 0 | Hydrophobic |
| C23 | CG1 | ILE- 243 | 4.26 | 0 | Hydrophobic |
| O19 | N | TYR- 244 | 3.25 | 172.49 | H-Bond (Protein Donor) |
| C2 | CB | TYR- 244 | 4.41 | 0 | Hydrophobic |