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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4gi40EXQueuine tRNA-ribosyltransferase2.4.2.29

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4gi40EXQueuine tRNA-ribosyltransferase2.4.2.291.000
4gkt0O1Queuine tRNA-ribosyltransferase2.4.2.290.637
4fps0UXQueuine tRNA-ribosyltransferase2.4.2.290.626
3ge7AFQQueuine tRNA-ribosyltransferase2.4.2.290.560
4gh30EVQueuine tRNA-ribosyltransferase2.4.2.290.545
1y5wNEZQueuine tRNA-ribosyltransferase2.4.2.290.544
2potGUNQueuine tRNA-ribosyltransferase2.4.2.290.534
1y5vNE8Queuine tRNA-ribosyltransferase2.4.2.290.532
4fsa0V3Queuine tRNA-ribosyltransferase2.4.2.290.531
4gh10WXQueuine tRNA-ribosyltransferase2.4.2.290.518
3sm0AEKQueuine tRNA-ribosyltransferase2.4.2.290.508
1q63AIQQueuine tRNA-ribosyltransferase2.4.2.290.507
1y5xE89Queuine tRNA-ribosyltransferase2.4.2.290.505
4gg90WWQueuine tRNA-ribosyltransferase2.4.2.290.501
2z1xPRFQueuine tRNA-ribosyltransferase2.4.2.290.498
4fr10V2Queuine tRNA-ribosyltransferase2.4.2.290.492
4q8pCKRQueuine tRNA-ribosyltransferase2.4.2.290.491
1q4wDQUQueuine tRNA-ribosyltransferase2.4.2.290.483
1ozqPRFQueuine tRNA-ribosyltransferase2.4.2.290.476
1k4gAIQQueuine tRNA-ribosyltransferase2.4.2.290.473
2bbf344Queuine tRNA-ribosyltransferase2.4.2.290.469
1efzPRFQueuine tRNA-ribosyltransferase2.4.2.290.467
4gcxPRFQueuine tRNA-ribosyltransferase2.4.2.290.466
4giy0WYQueuine tRNA-ribosyltransferase2.4.2.290.460
1f3eDPZQueuine tRNA-ribosyltransferase2.4.2.290.458
2qzrS79Queuine tRNA-ribosyltransferase2.4.2.290.456
2z1wBDIQueuine tRNA-ribosyltransferase2.4.2.290.455
2poqISDTrans-1,2-dihydrobenzene-1,2-diol dehydrogenase1.3.1.200.452
1hbvGANGag-Pol polyprotein/0.448
1qoqIGPTryptophan synthase alpha chain/0.446
1q66KMBQueuine tRNA-ribosyltransferase2.4.2.290.445
4zqcF6FTryptophan synthase alpha chain/0.443
1k4hAPQQueuine tRNA-ribosyltransferase2.4.2.290.440