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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4gg90WWQueuine tRNA-ribosyltransferase2.4.2.29

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4gg90WWQueuine tRNA-ribosyltransferase2.4.2.291.000
4gh10WXQueuine tRNA-ribosyltransferase2.4.2.290.746
1q4wDQUQueuine tRNA-ribosyltransferase2.4.2.290.659
3ge7AFQQueuine tRNA-ribosyltransferase2.4.2.290.657
4gh30EVQueuine tRNA-ribosyltransferase2.4.2.290.633
3sm0AEKQueuine tRNA-ribosyltransferase2.4.2.290.621
2qzrS79Queuine tRNA-ribosyltransferase2.4.2.290.590
4gkt0O1Queuine tRNA-ribosyltransferase2.4.2.290.589
4fps0UXQueuine tRNA-ribosyltransferase2.4.2.290.585
4fsa0V3Queuine tRNA-ribosyltransferase2.4.2.290.581
1f3eDPZQueuine tRNA-ribosyltransferase2.4.2.290.577
1y5xE89Queuine tRNA-ribosyltransferase2.4.2.290.574
1q65BHBQueuine tRNA-ribosyltransferase2.4.2.290.571
4gi40EXQueuine tRNA-ribosyltransferase2.4.2.290.571
1p0ePRFQueuine tRNA-ribosyltransferase2.4.2.290.567
1y5vNE8Queuine tRNA-ribosyltransferase2.4.2.290.563
4h7zGUNQueuine tRNA-ribosyltransferase2.4.2.290.562
1y5wNEZQueuine tRNA-ribosyltransferase2.4.2.290.558
2potGUNQueuine tRNA-ribosyltransferase2.4.2.290.552
4giy0WYQueuine tRNA-ribosyltransferase2.4.2.290.552
1k4gAIQQueuine tRNA-ribosyltransferase2.4.2.290.550
1q66KMBQueuine tRNA-ribosyltransferase2.4.2.290.550
4fr10V2Queuine tRNA-ribosyltransferase2.4.2.290.544
1efzPRFQueuine tRNA-ribosyltransferase2.4.2.290.539
3bloQEIQueuine tRNA-ribosyltransferase2.4.2.290.535
3gc4AAQQueuine tRNA-ribosyltransferase2.4.2.290.531
1ozqPRFQueuine tRNA-ribosyltransferase2.4.2.290.530
2z1xPRFQueuine tRNA-ribosyltransferase2.4.2.290.530
4q8pCKRQueuine tRNA-ribosyltransferase2.4.2.290.528
2bbf344Queuine tRNA-ribosyltransferase2.4.2.290.527
4gcxPRFQueuine tRNA-ribosyltransferase2.4.2.290.521
4hvxQEIQueuine tRNA-ribosyltransferase2.4.2.290.520
1k4hAPQQueuine tRNA-ribosyltransferase2.4.2.290.510
1q63AIQQueuine tRNA-ribosyltransferase2.4.2.290.510
4hqvQEIQueuine tRNA-ribosyltransferase2.4.2.290.494
2z1wBDIQueuine tRNA-ribosyltransferase2.4.2.290.488
3bllBPQQueuine tRNA-ribosyltransferase2.4.2.290.487
2pwuGUNQueuine tRNA-ribosyltransferase2.4.2.290.483
1n2vBDIQueuine tRNA-ribosyltransferase2.4.2.290.474
4gki0JNAminoglycoside 3'-phosphotransferase AphA1-IAB/0.451
2qak1UNGag-Pol polyprotein3.4.23.160.447
1it7GUNtRNA-guanine(15) transglycosylase2.4.2.480.446
4ug5H4BNitric oxide synthase oxygenase1.14.13.1650.445
3sn6P0GBeta-2 adrenergic receptor/0.445