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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4gcxPRFQueuine tRNA-ribosyltransferase2.4.2.29

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4gcxPRFQueuine tRNA-ribosyltransferase2.4.2.291.000
1ozqPRFQueuine tRNA-ribosyltransferase2.4.2.290.740
4hqvQEIQueuine tRNA-ribosyltransferase2.4.2.290.737
4hvxQEIQueuine tRNA-ribosyltransferase2.4.2.290.676
4hshQEIQueuine tRNA-ribosyltransferase2.4.2.290.659
3bllBPQQueuine tRNA-ribosyltransferase2.4.2.290.602
4h7zGUNQueuine tRNA-ribosyltransferase2.4.2.290.598
1k4gAIQQueuine tRNA-ribosyltransferase2.4.2.290.583
1k4hAPQQueuine tRNA-ribosyltransferase2.4.2.290.581
1f3eDPZQueuine tRNA-ribosyltransferase2.4.2.290.579
2z1wBDIQueuine tRNA-ribosyltransferase2.4.2.290.562
3gc4AAQQueuine tRNA-ribosyltransferase2.4.2.290.562
2bbf344Queuine tRNA-ribosyltransferase2.4.2.290.555
1efzPRFQueuine tRNA-ribosyltransferase2.4.2.290.552
2z1xPRFQueuine tRNA-ribosyltransferase2.4.2.290.552
3gc52MQQueuine tRNA-ribosyltransferase2.4.2.290.543
1q63AIQQueuine tRNA-ribosyltransferase2.4.2.290.540
4gh30EVQueuine tRNA-ribosyltransferase2.4.2.290.540
3ge7AFQQueuine tRNA-ribosyltransferase2.4.2.290.539
2qzrS79Queuine tRNA-ribosyltransferase2.4.2.290.536
1p0ePRFQueuine tRNA-ribosyltransferase2.4.2.290.531
4fps0UXQueuine tRNA-ribosyltransferase2.4.2.290.522
4gi40EXQueuine tRNA-ribosyltransferase2.4.2.290.521
4gh10WXQueuine tRNA-ribosyltransferase2.4.2.290.508
4gg90WWQueuine tRNA-ribosyltransferase2.4.2.290.507
3sm0AEKQueuine tRNA-ribosyltransferase2.4.2.290.501
1y5xE89Queuine tRNA-ribosyltransferase2.4.2.290.500
1y5wNEZQueuine tRNA-ribosyltransferase2.4.2.290.499
4giy0WYQueuine tRNA-ribosyltransferase2.4.2.290.492
1n2vBDIQueuine tRNA-ribosyltransferase2.4.2.290.491
4q8pCKRQueuine tRNA-ribosyltransferase2.4.2.290.479
1pxgPRFQueuine tRNA-ribosyltransferase2.4.2.290.473
1q4wDQUQueuine tRNA-ribosyltransferase2.4.2.290.472
2potGUNQueuine tRNA-ribosyltransferase2.4.2.290.471
4fr10V2Queuine tRNA-ribosyltransferase2.4.2.290.454
5dp2NAPCurF/0.451
3elePLPAminotransferase/0.447
2vd0D27Hematopoietic prostaglandin D synthase/0.446
1n71COAAac(6')-Ii protein/0.444
1v3q2DIPurine nucleoside phosphorylase2.4.2.10.443
3zkyWT4Isopenicillin N synthase1.21.3.10.442
3n3zIBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.441