sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 4emr | MGP | Ribosome inactivating protein |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 4emr | MGP | Ribosome inactivating protein | / | 1.000 | |
| 3qji | MGP | Ribosome inactivating protein | / | 0.663 | |
| 4lwx | MU2 | Ribosome inactivating protein | / | 0.626 | |
| 4jtp | ASC | Ribosome inactivating protein | / | 0.623 | |
| 3u8f | FGM | Ribosome inactivating protein | / | 0.581 | |
| 5ilw | URI | Ribosome inactivating protein | / | 0.549 | |
| 1mrk | FMC | Ribosome-inactivating protein alpha-trichosanthin | 3.2.2.22 | 0.521 | |
| 4zz6 | CTP | Ribosome inactivating protein | / | 0.484 | |
| 1ni4 | TPP | Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial | 1.2.4.1 | 0.451 | |
| 1ni4 | TPP | Pyruvate dehydrogenase E1 component subunit beta, mitochondrial | 1.2.4.1 | 0.451 | |
| 1x27 | ASP_TYR_VAL_HIS_PTR | Tyrosine-protein kinase Lck | 2.7.10.2 | 0.448 | |
| 4d2d | ALA_ALA_ALA | Di-or tripeptide:H+ symporter | / | 0.446 | |
| 1mvt | DTM | Dihydrofolate reductase | 1.5.1.3 | 0.445 | |
| 3nyt | ULP | UDP-2-acetamido-2-deoxy-3-oxo-D-glucuronate aminotransferase | 2.6.1.98 | 0.445 | |
| 1drf | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.444 | |
| 1z5u | CMP | Class B acid phosphatase | / | 0.442 | |
| 1lpc | CMP | Antiviral protein DAP-30 | 3.2.2.22 | 0.440 |