sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Distribution of Cavity similarities measured by Shaper

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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
4el5	D1M	Glycogen phosphorylase, muscle form	2.4.1.1

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity	Align
4el5	D1M	Glycogen phosphorylase, muscle form	2.4.1.1	1.000
4eke	D1I	Glycogen phosphorylase, muscle form	2.4.1.1	0.666
2qln	F59	Glycogen phosphorylase, muscle form	2.4.1.1	0.653
3ms4	21N	Glycogen phosphorylase, muscle form	2.4.1.1	0.617
2g9u	G27	Glycogen phosphorylase, muscle form	2.4.1.1	0.546
3t3i	GPW	Glycogen phosphorylase, muscle form	2.4.1.1	0.546
2qn7	HBZ	Glycogen phosphorylase, muscle form	2.4.1.1	0.512
3zcs	CAW	Glycogen phosphorylase, muscle form	2.4.1.1	0.510
4gpb	GFP	Glycogen phosphorylase, muscle form	2.4.1.1	0.506
5gpb	GPM	Glycogen phosphorylase, muscle form	2.4.1.1	0.503