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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4e907RGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4e907RGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/1.000
3k3hBYEHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.694
4g2j0WFHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.666
3k3ePDBHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.661
2yy2IBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.655
3dylIBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.647
3dy85GPHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.642
3qi4IBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.642
3jswJARHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.635
3dys5GPHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.624
4gh6LUOHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.623
3dylPCGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.621
4g2l0WLHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.619
3n3zIBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.617
3dy8IBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.615
3dyqPCGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.611
3dyqIBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.611
3jsiWTCHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.608
3dysIBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.602
3dynPCGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.589
3g45988cAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.508
1udtVIAcGMP-specific 3',5'-cyclic phosphodiesterase/0.474
3sl6JN8cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.460
3ituIBMcGMP-dependent 3',5'-cyclic phosphodiesterase3.1.4.170.448
3qppPFWcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.447
3sl8JN7cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.447
3v94WYQPhosphodiesterase/0.446
1uhoVDNcGMP-specific 3',5'-cyclic phosphodiesterase/0.445
1xomCIOcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.445
3qpnPFKcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.442
4hf415HcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.441