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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4bprFADFerredoxin--NADP reductase1.18.1.2

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4bprFADFerredoxin--NADP reductase1.18.1.21.000
1qgyFADFerredoxin--NADP reductase1.18.1.20.629
4c43FADFerredoxin--NADP reductase1.18.1.20.629
1e64FADFerredoxin--NADP reductase1.18.1.20.620
4af7FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.619
1gjrFADFerredoxin--NADP reductase1.18.1.20.616
2b5oFADFerredoxin--NADP reductase1.18.1.20.611
1qh0FADFerredoxin--NADP reductase1.18.1.20.603
1h85FADFerredoxin--NADP reductase1.18.1.20.602
4af6FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.601
1queFADFerredoxin--NADP reductase1.18.1.20.599
1go2FADFerredoxin--NADP reductase1.18.1.20.598
3vo2FADFerredoxin--NADP reductase/0.598
1fnbFADFerredoxin--NADP reductase, chloroplastic1.18.1.20.597
3zc3FADFerredoxin--NADP reductase1.18.1.20.595
3zbtFADFerredoxin--NADP reductase1.18.1.20.593
1bjkFADFerredoxin--NADP reductase1.18.1.20.592
1e63FADFerredoxin--NADP reductase1.18.1.20.592
1bx1FADFerredoxin--NADP reductase, chloroplastic1.18.1.20.586
1fncFDAFerredoxin--NADP reductase, chloroplastic1.18.1.20.581
1sm4FADFerredoxin--NADP reductase/0.572
1gawFADFerredoxin/0.568
1gaqFADFerredoxin/0.566
1qgzFADFerredoxin--NADP reductase1.18.1.20.565
1w87FADFerredoxin--NADP reductase1.18.1.20.561
1ewyFADFerredoxin--NADP reductase1.18.1.20.558
3mhpFADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.558
1h42FADFerredoxin--NADP reductase1.18.1.20.555
1b2rFADFerredoxin--NADP reductase1.18.1.20.550
3fpkFADFerredoxin-NADP reductase/0.543
1w35FADFerredoxin--NADP reductase1.18.1.20.542
1e62FADFerredoxin--NADP reductase1.18.1.20.538
2rc6FADFerredoxin--NADP reductase/0.538
3w5uFADFerredoxin/0.537
1fndFADFerredoxin--NADP reductase, chloroplastic1.18.1.20.536
1ogiFADFerredoxin--NADP reductase1.18.1.20.527
1amoFADNADPH--cytochrome P450 reductase/0.523
1ogjFADFerredoxin--NADP reductase1.18.1.20.518
1gr1FADFerredoxin--NADP reductase1.18.1.20.508
2ok8FADFerredoxin--NADP reductase, apicoplast/0.501
1bx0FADFerredoxin--NADP reductase, chloroplastic1.18.1.20.492
4yaoFADNADPH--cytochrome P450 reductase/0.491
1ja1FADNADPH--cytochrome P450 reductase/0.489
3qfsFADNADPH--cytochrome P450 reductase/0.484
2piaFMNPhthalate dioxygenase reductase/0.470
4fk8FADFerredoxin--NADP reductase/0.469
4uajFADNa(+)-translocating NADH-quinone reductase subunit F/0.469
2rc5FADFerredoxin--NADP reductase/0.468
2vnjFADNADPH:ferredoxin reductase/0.466
1j9zFADNADPH--cytochrome P450 reductase/0.465
2xncFADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.465
3jqrFADFerredoxin--NADP reductase, apicoplast/0.463
2jbsFMNp-hydroxyphenylacetate 3-hydroxylase, oxygenase component/0.461
3mjrAC2Deoxycytidine kinase2.7.1.740.461
3qftFADNADPH--cytochrome P450 reductase/0.461
4k1xFADNADPH:ferredoxin reductase/0.461
5ah5LSSLeucine--tRNA ligase/0.452
4a322CDGlycylpeptide N-tetradecanoyltransferase/0.451
4b4dFADFerredoxin-NADP reductase/0.451
2vcmM11Isopenicillin N synthase1.21.3.10.450
3g4iD71cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.449
1ni4TPPPyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial1.2.4.10.447
1ni4TPPPyruvate dehydrogenase E1 component subunit beta, mitochondrial1.2.4.10.447
2qdxFADFerredoxin--NADP+ reductase/0.447
1cqxFADFlavohemoprotein/0.446
1vkgCRIHistone deacetylase 83.5.1.980.446
3dy8IBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.446
2g8yNADHydroxycarboxylate dehydrogenase B/0.445
3qe2FADNADPH--cytochrome P450 reductase/0.445
1aquESTEstrogen sulfotransferase, testis isoform2.8.2.40.444
2bgiFADNADPH:ferredoxin reductase/0.444
2jdcCAOProbable acetyltransferase/0.444
2vn1FK5Peptidylprolyl isomerase/0.443
4b65NDPL-ornithine N(5)-monooxygenase/0.442
3dynPCGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.441
2jddACOProbable acetyltransferase/0.440
2wsa646Glycylpeptide N-tetradecanoyltransferase/0.440
3nu03TUDihydrofolate reductase1.5.1.30.440
3v2uATPProtein GAL3/0.440