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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4bcsBTNAvidin-related protein 4/5

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4bcsBTNAvidin-related protein 4/5/1.000
2fhnBNIAvidin-related protein 4/5/0.581
1y52BTNAvidin-related protein 4/5/0.576
2fhlBNIAvidin-related protein 4/5/0.575
1avdBTNAvidin/0.517
4bx7B4FStreptavidin/0.514
2uywBTNAvd protein/0.512
2rtiGLLStreptavidin/0.499
2izfBTNStreptavidin/0.488
2aviBTNAvidin/0.483
1stpBTNStreptavidin/0.482
2izlIMIStreptavidin/0.481
4dneDTBStreptavidin/0.481
1srfMTBStreptavidin/0.477
1sreHABStreptavidin/0.476
2izhBTNStreptavidin/0.476
3ry2BTNStreptavidin/0.476
1srgMHBStreptavidin/0.473
2rtoIMIStreptavidin/0.472
2rtqIMIStreptavidin/0.469
2uz2BTNAvd protein/0.469
1rxhBNIStreptavidin/0.465
2rtfBTNStreptavidin/0.464
1sriDMBStreptavidin/0.462
2izgBTNStreptavidin/0.462
4gdaBTNStreptavidin/0.461
2rtgBTNStreptavidin/0.460
4z28BTNHoefavidin/0.456
2rteBTNStreptavidin/0.455
1swtBTNStreptavidin/0.454
1i9hBNIStreptavidin/0.452
1mk5BTNStreptavidin/0.452
1f4fTP3Thymidylate synthase/0.449
2ftoCB3Thymidylate synthase/0.449
1pq944BOxysterols receptor LXR-beta/0.446
2c4iBTNAvidin/0.442
2izkGLLStreptavidin/0.442
3aivHBO4-hydroxy-7-methoxy-3-oxo-3,4-dihydro-2H-1,4-benzoxazin-2-yl glucoside beta-D-glucosidase, chloroplastic3.2.1.1820.442