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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3vy5FMNFMN-binding protein

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3vy5FMNFMN-binding protein/1.000
3a20FMNFMN-binding protein/0.713
2e83FMNFMN-binding protein/0.698
3a6rFMNFMN-binding protein/0.689
3a6qFMNFMN-binding protein/0.663
1flmFMNFMN-binding protein/0.650
3awhFMNFMN-binding protein/0.647
3vy2FMNFMN-binding protein/0.628
3amfFMNFMN-binding protein/0.587
1wlkFMNFMN-binding protein/0.529
1wliFMNFMN-binding protein/0.527
4k5p1OSM1 family aminopeptidase3.4.110.463
1pd9CO4Dihydrofolate reductase1.5.1.30.461
3bnkFMNFlavoredoxin/0.460
3oafOAGDihydrofolate reductase1.5.1.30.457
3s3vTOPDihydrofolate reductase1.5.1.30.456
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.454
3t8vBTJM1 family aminopeptidase3.4.110.449
1drfFOLDihydrofolate reductase1.5.1.30.445
3pqbVGPPutative oxidoreductase/0.442
3fhxPXLPyridoxal kinase2.7.1.350.441
2xfyACXBeta-amylase3.2.1.20.440
3vydVYDRenin3.4.23.150.440
4g2l0WLHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.440