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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3uph0C1Genome polyprotein2.7.7.48

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3uph0C1Genome polyprotein2.7.7.481.000
3u4o08EGenome polyprotein2.7.7.480.790
3u4r08FGenome polyprotein2.7.7.480.692
3tyvHI3Genome polyprotein2.7.7.480.671
4mk728OGenome polyprotein2.7.7.480.641
3igvB80Genome polyprotein2.7.7.480.629
2yoj8Y6Genome polyprotein2.7.7.480.628
2gc8885Polyprotein/0.616
4mk928RGenome polyprotein2.7.7.480.613
3csoXNIGenome polyprotein2.7.7.480.611
3d5m4MSGenome polyprotein2.7.7.480.607
4mka2AYGenome polyprotein2.7.7.480.607
2giqNN2Genome polyprotein2.7.7.480.599
3bsc2PDGenome polyprotein2.7.7.480.595
3g86T18Genome polyprotein2.7.7.480.592
4mkb28VGenome polyprotein2.7.7.480.591
3hkwIX6Genome polyprotein2.7.7.480.590
3hkyIX6Genome polyprotein2.7.7.480.581
3ska053Genome polyprotein2.7.7.480.579
3h59H59Genome polyprotein2.7.7.480.568
3ske054Genome polyprotein2.7.7.480.558
3d28B34Genome polyprotein2.7.7.480.557
3h2lYAKGenome polyprotein2.7.7.480.545
3br9DEYGenome polyprotein2.7.7.480.544
3gnvXNZGenome polyprotein2.7.7.480.534
3gynB42Genome polyprotein2.7.7.480.526
1nb6UTPGenome polyprotein2.7.7.480.513
4eaw0NQGenome polyprotein2.7.7.480.501
4ih71ERGenome polyprotein2.7.7.480.480
4iz02BIGenome polyprotein2.7.7.480.462
3cdeN3HGenome polyprotein2.7.7.480.440