Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ukoNADAlcohol dehydrogenase class-3

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3ukoNADAlcohol dehydrogenase class-3/1.000
4jjiNADAlcohol dehydrogenase class-3/0.521
4gl4NAIAlcohol dehydrogenase class-3/0.520
4dl9NADS-(hydroxymethyl)glutathione dehydrogenase/0.507
1ma0NADAlcohol dehydrogenase class-31.1.1.10.491
1mp0NADAlcohol dehydrogenase class-31.1.1.10.476
2fzeAPRAlcohol dehydrogenase class-31.1.1.10.453
4dlbNADS-(hydroxymethyl)glutathione dehydrogenase/0.446