sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Distribution of Cavity similarities measured by Shaper

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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
3ru9	NAD	UDP-N-acetylglucosamine 4-epimerase

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity	Align
3ru9	NAD	UDP-N-acetylglucosamine 4-epimerase	/	1.000
3ru7	NAD	UDP-N-acetylglucosamine 4-epimerase	/	0.633
3rue	NAD	UDP-N-acetylglucosamine 4-epimerase	/	0.622
3rud	NAD	UDP-N-acetylglucosamine 4-epimerase	/	0.600
3rua	NAD	UDP-N-acetylglucosamine 4-epimerase	/	0.587
3ruf	NAD	UDP-N-acetylglucosamine 4-epimerase	/	0.585
3ruh	NAD	UDP-N-acetylglucosamine 4-epimerase	/	0.569
3ruc	NAD	UDP-N-acetylglucosamine 4-epimerase	/	0.559
3lu1	NAD	UDP-N-acetylglucosamine 4-epimerase	/	0.541
1i3l	NAD	UDP-glucose 4-epimerase	/	0.466
1nah	NAD	UDP-glucose 4-epimerase	5.1.3.2	0.453