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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3r9nZ68Cyclin-dependent kinase 22.7.11.22

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3r9nZ68Cyclin-dependent kinase 22.7.11.221.000
3rahO1ZCyclin-dependent kinase 22.7.11.220.798
3qtsX46Cyclin-dependent kinase 22.7.11.220.633
3rpr25ZCyclin-dependent kinase 22.7.11.220.551
3r8vZ62Cyclin-dependent kinase 22.7.11.220.541
4fklCK2Cyclin-dependent kinase 22.7.11.220.520
2vtpLZ9Cyclin-dependent kinase 22.7.11.220.519
2c6lDT4Cyclin-dependent kinase 22.7.11.220.506
2r3mSCXCyclin-dependent kinase 22.7.11.220.505
2c69CT8Cyclin-dependent kinase 22.7.11.220.490
1w8cN69Cyclin-dependent kinase 22.7.11.220.486
3wblPDYCyclin-dependent kinase 22.7.11.220.481
2r3fSC8Cyclin-dependent kinase 22.7.11.220.478
2c6iDT1Cyclin-dependent kinase 22.7.11.220.477
3rm719ZCyclin-dependent kinase 22.7.11.220.477
3lfnA27Cyclin-dependent kinase 22.7.11.220.473
3fz1B98Cyclin-dependent kinase 22.7.11.220.472
3qzgX67Cyclin-dependent kinase 22.7.11.220.472
3raiX85Cyclin-dependent kinase 22.7.11.220.471
3sw719KCyclin-dependent kinase 22.7.11.220.468
1pxmCK5Cyclin-dependent kinase 22.7.11.220.466
3r8lZ30Cyclin-dependent kinase 22.7.11.220.464
3r83Z14Cyclin-dependent kinase 22.7.11.220.461
1h0w207Cyclin-dependent kinase 22.7.11.220.460
3qqlX03Cyclin-dependent kinase 22.7.11.220.460
3qxpX64Cyclin-dependent kinase 22.7.11.220.459
3r71X86Cyclin-dependent kinase 22.7.11.220.459
4kd11QKCyclin-dependent kinase 22.7.11.220.458
1y8yCT7Cyclin-dependent kinase 22.7.11.220.457
3r73X87Cyclin-dependent kinase 22.7.11.220.457
1e1xNW1Cyclin-dependent kinase 22.7.11.220.456
2c6kDT2Cyclin-dependent kinase 22.7.11.220.456
2r3r6SCCyclin-dependent kinase 22.7.11.220.455
3qx2X63Cyclin-dependent kinase 22.7.11.220.454
3s1h56ZCyclin-dependent kinase 22.7.11.220.454
3iggEFQCyclin-dependent kinase 22.7.11.220.453
3my5RFZCyclin-dependent kinase 22.7.11.220.453
3r7vZ02Cyclin-dependent kinase 22.7.11.220.452
2fvdLIACyclin-dependent kinase 22.7.11.220.451
2vu3LZECyclin-dependent kinase 22.7.11.220.451
3lfsA07Cyclin-dependent kinase 22.7.11.220.451
3r1yX76Cyclin-dependent kinase 22.7.11.220.451
4fkq42KCyclin-dependent kinase 22.7.11.220.450
2r3p3SCCyclin-dependent kinase 22.7.11.220.449
1gz8MBPCyclin-dependent kinase 22.7.11.220.448
2r3jSCJCyclin-dependent kinase 22.7.11.220.448
1oirHDYCyclin-dependent kinase 22.7.11.220.447
3qxoX65Cyclin-dependent kinase 22.7.11.220.447
3lfqA28Cyclin-dependent kinase 22.7.11.220.446
3r7yZ04Cyclin-dependent kinase 22.7.11.220.446
2c6o4SPCyclin-dependent kinase 22.7.11.220.445
2r3iSCFCyclin-dependent kinase 22.7.11.220.445
3r8uZ31Cyclin-dependent kinase 22.7.11.220.444
2a0cCK9Cyclin-dependent kinase 22.7.11.220.443
1oitHDTCyclin-dependent kinase 22.7.11.220.442
1gii1PUCyclin-dependent kinase 22.7.11.220.441