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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3mn9ATPActin-5C

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3mn9ATPActin-5C/1.000
3mn6ATPActin-5C/0.562
4jhdANPActin-5C/0.539
4pkhADPActin, alpha skeletal muscle/0.525
4m63ATPActin-5C/0.516
1lotATPActin, alpha skeletal muscle/0.512
3m6gATPActin, alpha skeletal muscle/0.510
1c0fATPMajor actin/0.508
3ffkATPActin, alpha skeletal muscle/0.497
1h1vATPActin, alpha skeletal muscle/0.494
4pl8ATPActin, alpha skeletal muscle/0.475
1nmdATPMajor actin/0.474
4k42ADPActin, alpha skeletal muscle/0.472
3a5mATPMajor actin/0.471
4pkgATPActin, alpha skeletal muscle/0.470
3chwATPMajor actin/0.468
5ce3ATPActin/0.463
3tu5ATPActin, alpha skeletal muscle/0.461
4rwtANPActin-5C/0.452
2q36ATPActin, alpha skeletal muscle/0.451
2v51ATPActin, alpha skeletal muscle/0.446
3u9dATPActin, alpha skeletal muscle/0.446
1kxpATPActin, alpha skeletal muscle/0.445
3m1fATPActin, alpha skeletal muscle/0.445
1nm1ATPMajor actin/0.440