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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3mn7ATPActin-5C

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3mn7ATPActin-5C/1.000
1eqyATPActin, alpha skeletal muscle/0.604
4cbxATPActin-2/0.577
4k41ATPActin, alpha skeletal muscle/0.560
4jhdANPActin-5C/0.550
3el2ATPActin-5C/0.549
3tu5ATPActin, alpha skeletal muscle/0.548
1s22ATPActin, alpha skeletal muscle/0.542
5ce3ATPActin/0.542
1rgiATPActin, alpha skeletal muscle/0.541
2q36ATPActin, alpha skeletal muscle/0.541
3eksATPActin-5C/0.541
4pl8ATPActin, alpha skeletal muscle/0.538
1t44ATPActin, alpha skeletal muscle/0.536
1yxqATPActin, alpha skeletal muscle/0.532
4k43ADPActin, alpha skeletal muscle/0.531
1qz5ATPActin, alpha skeletal muscle/0.529
3dawATPActin, alpha skeletal muscle/0.526
2oanATPActin, cytoplasmic 1/0.517
3u9dATPActin, alpha skeletal muscle/0.514
3a5mATPMajor actin/0.513
4ci6ATPActin/0.513
2p9kATPActin-related protein 2/0.511
1nmdATPMajor actin/0.499
1dejATPMajor actin/0.490
2q97ATPActin, alpha skeletal muscle/0.472
4pkgATPActin, alpha skeletal muscle/0.445