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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3m1fATPActin, alpha skeletal muscle

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3m1fATPActin, alpha skeletal muscle/1.000
4k42ADPActin, alpha skeletal muscle/0.530
3m6gATPActin, alpha skeletal muscle/0.518
4jhdANPActin-5C/0.515
1mduATPActin, alpha skeletal muscle/0.504
2q36ATPActin, alpha skeletal muscle/0.500
1h1vATPActin, alpha skeletal muscle/0.498
4pkiATPActin, alpha skeletal muscle/0.492
1nmdATPMajor actin/0.491
3tu5ATPActin, alpha skeletal muscle/0.490
4pkhADPActin, alpha skeletal muscle/0.490
1c0fATPMajor actin/0.486
3ffkATPActin, alpha skeletal muscle/0.483
4pl8ATPActin, alpha skeletal muscle/0.480
3u9dATPActin, alpha skeletal muscle/0.478
5ce3ATPActin/0.474
2v51ATPActin, alpha skeletal muscle/0.473
1lotATPActin, alpha skeletal muscle/0.470
3mn6ATPActin-5C/0.467
3w3dATPActin, gamma-enteric smooth muscle/0.466
3mn9ATPActin-5C/0.464
1kxpATPActin, alpha skeletal muscle/0.453
4rwtANPActin-5C/0.452
4pkgATPActin, alpha skeletal muscle/0.448
1ijjATPActin, alpha skeletal muscle/0.444
2a41ATPActin, alpha skeletal muscle/0.444
4m63ATPActin-5C/0.442