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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3lnmNAPVoltage-gated potassium channel subunit beta-2

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3lnmNAPVoltage-gated potassium channel subunit beta-2/1.000
4jtcNAPVoltage-gated potassium channel subunit beta-2/0.644
4jtdNAPVoltage-gated potassium channel subunit beta-2/0.575
2r9rNAPVoltage-gated potassium channel subunit beta-2/0.548
4jtaNAPVoltage-gated potassium channel subunit beta-2/0.536
4aubNAPL-glyceraldehyde 3-phosphate reductase1.1.10.520
2clpNDPAflatoxin B1 aldehyde reductase member 3/0.481
1lqaNDPProtein tas/0.473
2c91NAPAflatoxin B1 aldehyde reductase member 2/0.473
1ah4NAPAldose reductase1.1.1.210.462
2j8tNAPAldose reductase1.1.1.210.456
2pfhNDPAldose reductase1.1.1.210.453
3v36NAPAldose reductase1.1.1.210.453
4g5dNDPProstaglandin F synthase1.1.1.1880.450
1c9wNAPAldose reductase-related protein 2/0.448