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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3hpqAP5Adenylate kinase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3hpqAP5Adenylate kinase/1.000
4qbiAP5Adenylate kinase/0.593
2oo7AP5Adenylate kinase/0.591
2eu8AP5Adenylate kinase/0.574
3dkvAP5Adenylate kinase/0.560
1akeAP5Adenylate kinase/0.551
1ankANPAdenylate kinase/0.551
4jl6ADPAdenylate kinase/0.546
4mkgAP5Adenylate kinase/0.535
4jl5ADPAdenylate kinase/0.520
4x8oAP5Adenylate kinase/0.513
4qbhAP5Adenylate kinase/0.511
4nu0AP5Adenylate kinase/0.508
4jldADPAdenylate kinase/0.499
4jkyADPAdenylate kinase/0.490
4ikeADPAdenylate kinase/0.469
4x8lAP5Adenylate kinase/0.469
2akyAP5Adenylate kinase/0.466
3lqfNADGalactitol dehydrogenase/0.459
2eckADPAdenylate kinase/0.458
1zh8NAPUncharacterized protein/0.456
3iahNAPPutative oxoacyl-(Acyl carrier protein) reductase/0.447
3hl0NADMaleylacetate reductase/0.446