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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3h5sH5SGenome polyprotein2.7.7.48

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3h5sH5SGenome polyprotein2.7.7.481.000
3h5uH5UGenome polyprotein2.7.7.480.798
3h59H59Genome polyprotein2.7.7.480.624
3cvkN34Genome polyprotein2.7.7.480.616
4mk928RGenome polyprotein2.7.7.480.615
3cdeN3HGenome polyprotein2.7.7.480.608
3d5m4MSGenome polyprotein2.7.7.480.607
3fqk79ZGenome polyprotein2.7.7.480.596
2fvc888Polyprotein/0.594
3h98B5PGenome polyprotein2.7.7.480.590
3cwj321Genome polyprotein2.7.7.480.587
4ih71ERGenome polyprotein2.7.7.480.586
3bsa1PDGenome polyprotein2.7.7.480.581
4ih61EPGenome polyprotein2.7.7.480.581
1z4uPH9Polyprotein/0.580
3igvB80Genome polyprotein2.7.7.480.577
3d28B34Genome polyprotein2.7.7.480.576
3h2lYAKGenome polyprotein2.7.7.480.572
2yoj8Y6Genome polyprotein2.7.7.480.571
4mk728OGenome polyprotein2.7.7.480.570
3co93MSGenome polyprotein2.7.7.480.566
3u4o08EGenome polyprotein2.7.7.480.566
4iz02BIGenome polyprotein2.7.7.480.565
3golXNDGenome polyprotein2.7.7.480.554
3csoXNIGenome polyprotein2.7.7.480.552
3e51N35Genome polyprotein2.7.7.480.552
3gnwXNCGenome polyprotein2.7.7.480.548
3upi0C2Genome polyprotein2.7.7.480.541
4mka2AYGenome polyprotein2.7.7.480.541
3ska053Genome polyprotein2.7.7.480.540
3gnvXNZGenome polyprotein2.7.7.480.534
4mk828QGenome polyprotein2.7.7.480.533
4eaw0NQGenome polyprotein2.7.7.480.530
3gynB42Genome polyprotein2.7.7.480.516
1yvfPH7Polyprotein/0.502
3qgd26SGenome polyprotein2.7.7.480.454
1ay0TPPTransketolase 12.2.1.10.450
1v5z2HCMajor NAD(P)H-flavin oxidoreductase1.6.990.447
1p4aPCPPur operon repressor/0.443
2qe5617Polyprotein/0.440