sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Distribution of Cavity similarities measured by Shaper

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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
3gg2	UGA	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity	Align
3gg2	UGA	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family	/	1.000
2y0d	UGA	UDP-glucose dehydrogenase	/	0.556
2qg4	UGA	UDP-glucose 6-dehydrogenase	1.1.1.22	0.551
4edf	UPG	UDP-glucose 6-dehydrogenase	1.1.1.22	0.549
3tdk	UPG	UDP-glucose 6-dehydrogenase	1.1.1.22	0.547
2q3e	UPG	UDP-glucose 6-dehydrogenase	1.1.1.22	0.533
3ptz	UDX	UDP-glucose 6-dehydrogenase	1.1.1.22	0.529
3khu	UPG	UDP-glucose 6-dehydrogenase	1.1.1.22	0.520
1mv8	GDX	GDP-mannose 6-dehydrogenase	1.1.1.132	0.440