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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ge7AFQQueuine tRNA-ribosyltransferase2.4.2.29

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3ge7AFQQueuine tRNA-ribosyltransferase2.4.2.291.000
4gkt0O1Queuine tRNA-ribosyltransferase2.4.2.290.622
1ozqPRFQueuine tRNA-ribosyltransferase2.4.2.290.571
3sm0AEKQueuine tRNA-ribosyltransferase2.4.2.290.562
4gh10WXQueuine tRNA-ribosyltransferase2.4.2.290.561
1q4wDQUQueuine tRNA-ribosyltransferase2.4.2.290.559
2z1xPRFQueuine tRNA-ribosyltransferase2.4.2.290.559
1y5vNE8Queuine tRNA-ribosyltransferase2.4.2.290.553
4gg90WWQueuine tRNA-ribosyltransferase2.4.2.290.550
4gi40EXQueuine tRNA-ribosyltransferase2.4.2.290.543
4gh30EVQueuine tRNA-ribosyltransferase2.4.2.290.542
1f3eDPZQueuine tRNA-ribosyltransferase2.4.2.290.538
1q63AIQQueuine tRNA-ribosyltransferase2.4.2.290.531
1efzPRFQueuine tRNA-ribosyltransferase2.4.2.290.528
4giy0WYQueuine tRNA-ribosyltransferase2.4.2.290.519
1y5xE89Queuine tRNA-ribosyltransferase2.4.2.290.516
1p0ePRFQueuine tRNA-ribosyltransferase2.4.2.290.506
1k4gAIQQueuine tRNA-ribosyltransferase2.4.2.290.502
3gc4AAQQueuine tRNA-ribosyltransferase2.4.2.290.499
2potGUNQueuine tRNA-ribosyltransferase2.4.2.290.493
4fps0UXQueuine tRNA-ribosyltransferase2.4.2.290.492
4fr10V2Queuine tRNA-ribosyltransferase2.4.2.290.491
1q66KMBQueuine tRNA-ribosyltransferase2.4.2.290.488
4fsa0V3Queuine tRNA-ribosyltransferase2.4.2.290.484
4gcxPRFQueuine tRNA-ribosyltransferase2.4.2.290.482
1y5wNEZQueuine tRNA-ribosyltransferase2.4.2.290.481
2qzrS79Queuine tRNA-ribosyltransferase2.4.2.290.477
4hqvQEIQueuine tRNA-ribosyltransferase2.4.2.290.474
2bbf344Queuine tRNA-ribosyltransferase2.4.2.290.472
4h7zGUNQueuine tRNA-ribosyltransferase2.4.2.290.469
4q8pCKRQueuine tRNA-ribosyltransferase2.4.2.290.460
2z1wBDIQueuine tRNA-ribosyltransferase2.4.2.290.455
3gc52MQQueuine tRNA-ribosyltransferase2.4.2.290.455
4hvxQEIQueuine tRNA-ribosyltransferase2.4.2.290.449
4hshQEIQueuine tRNA-ribosyltransferase2.4.2.290.446