Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
PDB ID | HET | Uniprot Name | EC Number |
---|---|---|---|
3gdu | TYR_ARG_PHE | Serine endoprotease DegS | 3.4.21.107 |
PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
---|---|---|---|---|---|
3gdu | TYR_ARG_PHE | Serine endoprotease DegS | 3.4.21.107 | 1.000 | |
3gdv | TYR_GLN_PHE | Serine endoprotease DegS | 3.4.21.107 | 0.635 | |
2b37 | NAD | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.470 | |
1hdc | CBO | 3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase | 1.1.1.53 | 0.451 | |
5itz | GTP | Tubulin alpha-1B chain | / | 0.449 | |
1e3e | NAI | Alcohol dehydrogenase 4 | 1.1.1.1 | 0.448 | |
2znn | S44 | Peroxisome proliferator-activated receptor alpha | / | 0.446 | |
3lqf | NAD | Galactitol dehydrogenase | / | 0.442 | |
1x1a | SAM | C-20 methyltransferase | / | 0.441 | |
5adh | APR | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.441 | |
3suf | SUE | Polyprotein | / | 0.440 |