sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3fpz | AHZ | Thiamine thiazole synthase |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 3fpz | AHZ | Thiamine thiazole synthase | / | 1.000 | |
| 1rp0 | AHZ | Thiamine thiazole synthase, chloroplastic | / | 0.522 | |
| 1w4x | FAD | Phenylacetone monooxygenase | 1.14.13.92 | 0.468 | |
| 4gh5 | NAD | Short-chain dehydrogenase/reductase SDR | / | 0.465 | |
| 3up5 | FAD | 2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase | 1.14.13.160 | 0.457 | |
| 4l4x | NDP | AmphI | / | 0.456 | |
| 5idw | NAP | Short-chain dehydrogenase/reductase SDR | / | 0.449 | |
| 4d04 | FAD | Phenylacetone monooxygenase | 1.14.13.92 | 0.445 | |
| 1lbc | CYZ | Glutamate receptor 2 | / | 0.444 | |
| 2q1w | NAD | Putative nucleotide sugar epimerase/ dehydratase | / | 0.444 | |
| 2ztm | NAD | D(-)-3-hydroxybutyrate dehydrogenase | / | 0.444 | |
| 3doc | NAD | Glyceraldehyde-3-phosphate dehydrogenase | / | 0.444 | |
| 3gwd | FAD | Cyclohexanone monooxygenase | / | 0.442 | |
| 3w8e | NAD | 3-hydroxybutyrate dehydrogenase | / | 0.442 | |
| 3b20 | NAD | Glyceraldehyde-3-phosphate dehydrogenase | / | 0.441 | |
| 1jtv | TES | Estradiol 17-beta-dehydrogenase 1 | 1.1.1.62 | 0.440 | |
| 1kbo | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.440 |