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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3e51N35Genome polyprotein2.7.7.48

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3e51N35Genome polyprotein2.7.7.481.000
3bsa1PDGenome polyprotein2.7.7.480.720
3gynB42Genome polyprotein2.7.7.480.707
3br9DEYGenome polyprotein2.7.7.480.681
2fvc888Polyprotein/0.608
4ih71ERGenome polyprotein2.7.7.480.606
3tyvHI3Genome polyprotein2.7.7.480.600
3co93MSGenome polyprotein2.7.7.480.596
3h5uH5UGenome polyprotein2.7.7.480.594
4iz02BIGenome polyprotein2.7.7.480.593
3igvB80Genome polyprotein2.7.7.480.588
3g86T18Genome polyprotein2.7.7.480.587
3hkyIX6Genome polyprotein2.7.7.480.587
2gc8885Polyprotein/0.586
3cwj321Genome polyprotein2.7.7.480.573
2yoj8Y6Genome polyprotein2.7.7.480.572
3uph0C1Genome polyprotein2.7.7.480.569
3golXNDGenome polyprotein2.7.7.480.563
3d5m4MSGenome polyprotein2.7.7.480.560
3upi0C2Genome polyprotein2.7.7.480.555
4mk728OGenome polyprotein2.7.7.480.549
3h5sH5SGenome polyprotein2.7.7.480.548
3ska053Genome polyprotein2.7.7.480.543
3csoXNIGenome polyprotein2.7.7.480.542
3ske054Genome polyprotein2.7.7.480.541
3cdeN3HGenome polyprotein2.7.7.480.535
4mk928RGenome polyprotein2.7.7.480.534
3gnvXNZGenome polyprotein2.7.7.480.532
3h59H59Genome polyprotein2.7.7.480.528
3d28B34Genome polyprotein2.7.7.480.525
1z4uPH9Polyprotein/0.524
3h98B5PGenome polyprotein2.7.7.480.524
4eaw0NQGenome polyprotein2.7.7.480.524
3cvkN34Genome polyprotein2.7.7.480.521
1yvfPH7Polyprotein/0.512
3h2lYAKGenome polyprotein2.7.7.480.512
4mk828QGenome polyprotein2.7.7.480.504
3gnwXNCGenome polyprotein2.7.7.480.501
3hkwIX6Genome polyprotein2.7.7.480.486
3fqk79ZGenome polyprotein2.7.7.480.463
2qe5617Polyprotein/0.455