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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3dmtNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.12

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3dmtNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.121.000
4p8rNADGlyceraldehyde-3-phosphate dehydrogenase/0.624
1ml3NADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.589
1qxsNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.565
3e5rNADGlyceraldehyde-3-phosphate dehydrogenase 1, cytosolic1.2.1.120.561
3idsNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.561
1gypNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.556
1znqNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.549
4o59NADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.539
1a7kNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.538
3lvfNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.536
3ksdNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.533
3hjaNADGlyceraldehyde-3-phosphate dehydrogenase/0.531
4k9dNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.525
3cmcNADGlyceraldehyde-3-phosphate dehydrogenase/0.520
2vynNADGlyceraldehyde-3-phosphate dehydrogenase A/0.518
3cifNADGlyceraldehyde-3-phosphate dehydrogenase/0.518
1gd1NADGlyceraldehyde-3-phosphate dehydrogenase/0.517
3dbvNADGlyceraldehyde-3-phosphate dehydrogenase/0.515
1nqaNADGlyceraldehyde-3-phosphate dehydrogenase/0.513
3cpsNADGlyceraldehyde-3-phosphate dehydrogenase/0.510
3l4sNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.507
1nptNADGlyceraldehyde-3-phosphate dehydrogenase/0.498
2vyvNADGlyceraldehyde-3-phosphate dehydrogenase A/0.497
3b20NADGlyceraldehyde-3-phosphate dehydrogenase/0.495
3docNADGlyceraldehyde-3-phosphate dehydrogenase/0.468
3k2bNADGlyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic1.2.1.130.464
2pkrNDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.462
1u8fNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.449
1nboNADGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.441